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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS00140 [old locus tag: SAP031 ]
- pan locus tag?:
- symbol: SA_RS00140
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS00140 [old locus tag: SAP031 ]
- symbol: SA_RS00140
- product: hypothetical protein
- replicon: pN315
- strand: -
- coordinates: 23716..24459
- length: 744
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGAAAAGTGTGAAAAAGTTGAGTGAAGAATTAGGGGTTAGTAAGCAAACGATTTTTAAT
AATATTAAGCGATTGAATATAGAGACAATAAAACAGGAAAACACTTCGTTTATTAAAGAA
GATACCGATATAGAAAAAATCATTCGAAGAGTAAATGAAAATAAAAAGAAATATGGTTTT
GAAAGTACTACTGAAGACAAACAAAAAAAAGGGTCGGATAATATTAATTTTGAATCGAAA
AGCGATGCTCAAATAGTAGAAATCCTTAAAAATCAGATTGATACTTTAAATAATCAAATT
GAAAAACAAGAAAGTCGTCATGAAACAACAATTGAATTTTACAGAAAAGAGTTGCAAGAA
AGATCAAAATTGCTTGAAAATCAGCAAGTTCTGGCATTAGAGAGTAATAAAAAGATTCAA
AAATTAGAAAATCAATTAGAAAAAGAAAAACACCTTAATTATCCCTTTGATACATCTACT
AACACTAGACAAAACGTTGATGCACAAGAAAAAACATATACTACTAATCCTGTAAATATT
AACAGAGATCAGGAAGAAACTAAAGAAACAGAGATTCAATATAAGGATATATCTGGAAGT
CAAAGCGACGAAAGTACACAAGGTGAAGAAGCAAAAAAAGAAGACGTTCCAGCTAATCTA
AATGACAATGATAGTGATATAGAAGAAAAGAGTGAAGAAACGGAACCTAAAAAGGGGTTT
TGGAGTCGTTTGTTTGGTAGCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS00140 [old locus tag: SAP031 ]
- symbol: SA_RS00140
- description: hypothetical protein
- length: 247
- theoretical pI: 4.77953
- theoretical MW: 28861.5
- GRAVY: -1.33684
⊟Function[edit | edit source]
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotides 2'-Deoxyribonucleotide metabolism thymidylate synthase (TIGR03284; EC 2.1.1.45; HMM-score: 15.7)and 2 moreCellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 6.4)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 6.4)
- TheSEED: see SAP031
- PFAM: no clan defined DUF536; Protein of unknown function, DUF536 (PF04394; HMM-score: 51.2)and 9 moreHTH (CL0123) HTH_11; HTH domain (PF08279; HMM-score: 21.3)HTH_22; HTH domain (PF13309; HMM-score: 16.7)GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 16.6)HTH_23; Homeodomain-like domain (PF13384; HMM-score: 16.1)HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 13.4)HTH_29; Winged helix-turn helix (PF13551; HMM-score: 13.1)HTH_10; HTH DNA binding domain (PF04967; HMM-score: 13)NUMOD1; NUMOD1 domain (PF07453; HMM-score: 12.8)TIM_barrel (CL0036) Glu_synthase; Conserved region in glutamate synthase (PF01645; HMM-score: 9.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005292
- TAT(Tat/SPI): 0.000312
- LIPO(Sec/SPII): 0.00078
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKSVKKLSEELGVSKQTIFNNIKRLNIETIKQENTSFIKEDTDIEKIIRRVNENKKKYGFESTTEDKQKKGSDNINFESKSDAQIVEILKNQIDTLNNQIEKQESRHETTIEFYRKELQERSKLLENQQVLALESNKKIQKLENQLEKEKHLNYPFDTSTNTRQNVDAQEKTYTTNPVNINRDQEETKETEIQYKDISGSQSDESTQGEEAKKEDVPANLNDNDSDIEEKSEETEPKKGFWSRLFGS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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