Jump to navigation
Jump to search
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS00450 [old locus tag: SA0061 ]
- pan locus tag?: SAUPAN000448000
- symbol: SA_RS00450
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS00450 [old locus tag: SA0061 ]
- symbol: SA_RS00450
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 68912..69958
- length: 1047
- essential: no DEG
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021ATGAATAATAAAGACATATATAGCGATGATTTTCAAAATGCTTTAGTAGACATAATTTTG
AACATTGATAAAATAAATGTCAAAGAAGTTTTTGATGATTCATGTAGGGCTGTAGATCAA
GATAATAAAAAGGATACTTTAAATCGTTCTCCTAAAGATTTTTCCATAAATATAAGTGAT
ATAGTAAGATATAGTATACTTTGCATGGAAAATTTAAGTAGTGACAAGATTGAAGAAAAT
ATCAATATGATTAAAAATCATAGTTCAGAATTAAATGACAACGACATGTTTATTCAAGAA
AAAAATAATTTTACAACTAATTTTAATAAATTCTGCAACGCTCTAGGAATAAACATAGCA
AACTTTAAATCAGGAAAATCATATGTATTTAAACCAAAAAGTTTATTTGTATTATATGAT
ATACTCTCAAACAACTCAGTTTATCTACACTTTTTTAAAAACGGTATCAATGACAAAGAT
ATAGATTCTTCTAATCGTATCAAAGAGAACTTATATTATTTCATCAATCATGAAATTACT
GATCAAAGAGATTATGAACATGCTCTGACTAATTATTATCTCTATTTTCTAGTAGACAGT
AATATAGAAATTGGAATCAAATCTATCATTATTAAGATTTTCACTGAAAAAGGTATCACT
TCTAAAGATAAACTTCAGATTCTTGAATATTATTTAGATGAAATAGACGATTTAAACACT
GAAATAAGTACCAAAATTGCTGATGCTCATGTTAAAAATAGTACAAACTTTTTAGAAAAT
GAAAAAGTAAGTATAAACAGTAATTTAGCAAAATATATTACTCATCGAGACACCAGAGCT
TCGGCACCTAAAAATATGCTGTTATCATTAATTTTAAATAGTGACCTAGTGTCTCCAAAA
GACTTAGAAGAAAAAGAACTCAAATATCCAAAGAAAATAACAAAAGAACATCATGATAAA
TTAATAAAAGAAATCAATAAAGCACTAGATTATTATAATGATAATAACACCACTCCTTCT
GACTACTTTTATATAACTTCAGATTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1047
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS00450 [old locus tag: SA0061 ]
- symbol: SA_RS00450
- description: hypothetical protein
- length: 348
- theoretical pI: 4.97448
- theoretical MW: 40553.3
- GRAVY: -0.576724
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SA0061
- PFAM: no clan defined DUF6353; Family of unknown function (DUF6353) (PF19880; HMM-score: 9.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.068
- Cytoplasmic Membrane Score: 0.001
- Cell wall & surface Score: 0
- Extracellular Score: 0.9309
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.014215
- TAT(Tat/SPI): 0.000685
- LIPO(Sec/SPII): 0.002995
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNNKDIYSDDFQNALVDIILNIDKINVKEVFDDSCRAVDQDNKKDTLNRSPKDFSINISDIVRYSILCMENLSSDKIEENINMIKNHSSELNDNDMFIQEKNNFTTNFNKFCNALGINIANFKSGKSYVFKPKSLFVLYDILSNNSVYLHFFKNGINDKDIDSSNRIKENLYYFINHEITDQRDYEHALTNYYLYFLVDSNIEIGIKSIIIKIFTEKGITSKDKLQILEYYLDEIDDLNTEISTKIADAHVKNSTNFLENEKVSINSNLAKYITHRDTRASAPKNMLLSLILNSDLVSPKDLEEKELKYPKKITKEHHDKLIKEINKALDYYNDNNTTPSDYFYITSD
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]