COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS00470
• pan locus tag^?:
• symbol: SA_RS00470
• pan gene symbol^?: —
• synonym:
• product: C4-dicarboxylate ABC transporter

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS00470
• symbol: SA_RS00470
• product: C4-dicarboxylate ABC transporter
• replicon: chromosome
• strand: -
• coordinates: 71861..72781
• length: 921
• essential: unknown

⊟Accession numbers

• Location: NC_002745 (71861..72781) NCBI
• BioCyc: SA_RS00470 BioCyc
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
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  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  
  ATTTTCTTAGCAAGCTCTGTGGGTAGTACATTCTCAACAATCAACCCATTCTCAGTCGTC
  ATTGCTTCTAATGCAGCAGGAACAACTTTTACTGATGGTCTTTATTGGAGAATAGGCGCT
  TGTATCATCGGTGCCATATTTGTTATTAGTTATTTATTCTGGTATTGTAAAAAAATTAAA
  AAAGATCCTAAATCCTCTTATTCTTATGAAGACAAAGCAGCATTTGAAAAACAGTGGTCT
  GTGCTCCATGATGACGGTTCTTCTGAGTTTACATTACGTAAAAAGATTATTCTTACGCTT
  TTCGTCCTACCATTCCCTATTATGGTTTGGGGTGTTATGACACAAGGATGGTGGTTCCCA
  GTCATGGCATCTGCATTCTTAATCTTTACCATTGTCATCATGTTTATTGCTGGAACAGGA
  CAATATGGTTTAGGCGAAAAAGGCACTGTAGATGCATTCGTTAATGGCGCTTCAAGTTTA
  GTAGGTGTATCTTTAATCATTGGTTTAGCTCGTGGAATCAACTTAGTATTGAATAAAGGA
  ATGATTTCTGACACAATCTTGCACTTTTCATCATCTATCGTGCAACATATGAGTGGGCCT
  TTATTTATCATTGTTCTGCTCTTTATCTTTTTCTGTTTAGGATTTATCGTACCATCATCA
  TCAGGATTAGCAGTATTATCTATGCCTATCTTTGCGCCATTAGCTGATACAGTAGGTATA
  CCAAGATTTGTTATTGTTACAACATATCAATTCGGTCAGTATGCAATGTTGTTCTTAGCG
  CCTACTGGACTTGTAATGGCAACACTTCAAATGTTAAACGTGCGCTACTCACACTGGTTA
  CGTTTCGTATGGCCTGTTGTCGCGTTTGTTTTAATATTTGGTGGAGGCTTACTCATTACA
  CAAGTTTTAATATATTCTTAA
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  921
  

⊟Protein

⊟General

• locus tag: SA_RS00470
• symbol: SA_RS00470
• description: C4-dicarboxylate ABC transporter
• length: 306
• theoretical pI: 9.27243
• theoretical MW: 33628.8
• GRAVY: 0.890196

⊟Function

• TIGRFAM:
• TheSEED:
• PFAM:
  IT (CL0182) DcuC; C4-dicarboxylate anaerobic carrier (PF03606; HMM-score: 362.3)
  and 1 more
  no clan defined Syndecan; Syndecan domain (PF01034; HMM-score: 6.8)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 9
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.037425
  • TAT(Tat/SPI): 0.00257
  • LIPO(Sec/SPII): 0.037594
• predicted transmembrane helices (TMHMM): 8

⊟Accession numbers

• GI:
• RefSeq: WP_075339478 NCBI
• UniProt:

⊟Protein sequence

• MFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIIGAIFVISYLFWYCKKIKKDPKSSYSYEDKAAFEKQWSVLHDDGSSEFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications