From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS00875 [old locus tag: SA0141 ]
  • pan locus tag?: SAUPAN000962000
  • symbol: SA_RS00875
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS00875 [old locus tag: SA0141 ]
  • symbol: SA_RS00875
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 162124..162891
  • length: 768
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (162124..162891) NCBI
  • BioCyc: SA_RS00875 BioCyc
  • MicrobesOnline: see SA0141

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    TTGGAAACAATTAAACAAGAAGTAAGAGAATCTATTGTTAAAGGAATTATCGCGGGATAT
    AAGGACTATGTTAATGAGAGAAATGAAGTCAAGAAACGTATGGTGATTAGTGATGCCTAT
    GCCTTTACTAAATCTAATCATATTGAAAGTCAAGTTGCTAAGCATTTGGAAAATTTTGTT
    AAGTATATTAAAGAAAATGCTGGACCATCATGGAAGTATTTAAAGTTTATATTTAATAAA
    GATGAAGAGAAAAATAATATCATGTTTATATTGAAAAATGAAGATTACTTTGATGAAAAA
    AATGTAAGCGTAGGGAAGAGTTTAGTTGCTGATAAAAATCCAAAAAGTAAAAACTACCTA
    GAGGTACTTATGGCTAAGAATAGGGACATTAATTTTGGTACTGTTGGAGAAGATTTTGAA
    ATTGGGCATCAAATGACTGCAGATAGTATATTATTTAATATAAAAGAAGGCAGTAATAGA
    GATATTAATTCTTATTTTTTAATTATTACATATCGTATTGATAAAGAATCAAAGCAATTA
    GCTGCAATCAAACAATGGTTACCAAATCCAGAAACAAATTCTGCAATTATGGTTGATGAT
    TTGACAGAGTTAATAGAAAAAGTAATAGTAGAAAGAGAAGATTATCATATTGACGAAGAA
    GAGTTAGAAGTACTTAAAAACGATGGAGAGTTAGAACTCATAGATGTGGAACATGCATTT
    GGTATCAGTATCGATGAAGGTAACGATATGATTGAAAGTGAAAGGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    768

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS00875 [old locus tag: SA0141 ]
  • symbol: SA_RS00875
  • description: hypothetical protein
  • length: 255
  • theoretical pI: 4.54531
  • theoretical MW: 29616.2
  • GRAVY: -0.572549

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0141
  • PFAM:
    ATP_synthase (CL0255) OSCP; ATP synthase delta (OSCP) subunit (PF00213; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008596
    • TAT(Tat/SPI): 0.001055
    • LIPO(Sec/SPII): 0.001412
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • METIKQEVRESIVKGIIAGYKDYVNERNEVKKRMVISDAYAFTKSNHIESQVAKHLENFVKYIKENAGPSWKYLKFIFNKDEEKNNIMFILKNEDYFDEKNVSVGKSLVADKNPKSKNYLEVLMAKNRDINFGTVGEDFEIGHQMTADSILFNIKEGSNRDINSYFLIITYRIDKESKQLAAIKQWLPNPETNSAIMVDDLTELIEKVIVEREDYHIDEEELEVLKNDGELELIDVEHAFGISIDEGNDMIESER

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS00875&oldid=100085"