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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS01155 [old locus tag: SA0195 ]
  • pan locus tag?: SAUPAN001050000
  • symbol: SA_RS01155
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS01155 [old locus tag: SA0195 ]
  • symbol: SA_RS01155
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 229518..231236
  • length: 1719
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (229518..231236) NCBI
  • BioCyc: SA_RS01155 BioCyc
  • MicrobesOnline: see SA0195

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
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    1681
    TTGGGAAAGCCTCTTTTTAAAAAAGGAGATTCAATGAATAATTCAATATTTTATACCTAT
    TTAAAATTTAATCTTAGATATTTTATCCGTAGAAAATTTGAAATTGTAAAAAGGTCGCGA
    CTTAATGTTACTACAAAAATACTGTTTTTAATTAAATTGATTTTTTCGTCACTATTATTA
    TTTATTTCAACTATTATGTTAGCTGACTATTTCAGTGATTATATTGATTTTATAGAATAT
    TATTTCTATGCGAGTATGTTTATTTACATTGTATTTATACCATTAATACCTAGAACTAAA
    TTATTGATCAATCCAATGGATAAACAGCTGTTATATAGATCTAGTTTGAGAGAAGTTGAC
    ATTTTTAACTTGATATATGCTTCAGACGTTTTAAAAAAGTTTGTTGGATATTTTAATTTG
    TTGATAGTTGGTATGGCTATTAGTTTATATCATATTAGTCCTTTTATATTTAACCTCAAG
    GTTTTTTGTGCACTAATATACTTTTCAACAATCTCTTATGTAATTCAAATTATTTTTATA
    AATATTAAAGTCATAAGCACAAAAAAATTATTTTCTTATCACTATTGTGTTTTTAATTTT
    ATGATGGGAAGCATTGTTTCTGTTATTGGATTTGTCGTCTCATTTCTTTTAGTAAATTTA
    TTAATAAAGCCCTTTTTAGTTTTTTCGACATATGTAATAAAAAGTAAGAAAACTTTTGAA
    TGGTATAGTTATTTTCAGGATATAAAGAACGAAGTCATTATTATTAATGAAAAAGTTATG
    CAATTATTAGATTATATATCACCTCACACTATTTTTATGAGATTAAACTTTGTGAATATA
    TCATTTGTGATTATTACAATAGCTTTATTTATAGCGTTATATTATTTTAATAAAATAGGG
    TTTTGGTATAGAAAAGAAGATATCTATCTATCTTCAACAAATATTAATTTTTCGTTGCCA
    ATTTCAATAAAAGCTATAACAACAATACAGCTAAAACACTGGATAAGTAACAAAGAAGAA
    GTTAATTTACATAAACCTTTCTTCTATATTAGTTATTCAATATGGTTCTTTTTAGGGTGT
    TTAATCTATTTTTCACAGATGGCATATAATCAGTTAGCTAATGCAGTTATTTTTATTTTG
    ATATTAAACACTATAACTCGTGATAGTTTTTCTGCGGGGACGGATTTTTTTACTAAATCA
    TTACGTTTTGATTCAGATAGAAAAAGTATCGGTTTGTATAGGATGTCAAACACTGATTTT
    AAACAAATTTACGATTCTAAATTATCTCTAATTCGCTTTATTGGTTTTAAAGAAACAATA
    CTTGCTATTATTTTATTAGCAATATTTTTAAATCAAGACATATATTTATATATAATTGGA
    TTTGAAATAATAATCATCAATACAGTAATAATTCCTAATTTATCATTATTACCTTCGTAT
    TTATCTCCACATTTCAATCATCAACATTACAGTGAATTAGAGTCTTTTGAAGAACAAATT
    TTTCTTGAAGATACTGTTTTTGATAAAGTTAAGAATTTTTTATCGTCATCATATTTTTTA
    ATTCTATTTGTAGGTTACTTATCTCAACGTAATTATATTGACATAATGATTTTTATAATT
    ATTTTCAACATTTTAGCCTTAATACTTGTTTCGTTGTTTATTAGGTTTTCTAAACAAAAA
    ATAACAAAGTCTTGGAGAAAGAGGGATTTATATTTATAG
    60
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    1719

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS01155 [old locus tag: SA0195 ]
  • symbol: SA_RS01155
  • description: hypothetical protein
  • length: 572
  • theoretical pI: 9.82131
  • theoretical MW: 67903.2
  • GRAVY: 0.578322

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage holin, LL-H family (TIGR01673; HMM-score: 10.1)
  • TheSEED: see SA0195
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004446
    • TAT(Tat/SPI): 0.000289
    • LIPO(Sec/SPII): 0.002238
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGKPLFKKGDSMNNSIFYTYLKFNLRYFIRRKFEIVKRSRLNVTTKILFLIKLIFSSLLLFISTIMLADYFSDYIDFIEYYFYASMFIYIVFIPLIPRTKLLINPMDKQLLYRSSLREVDIFNLIYASDVLKKFVGYFNLLIVGMAISLYHISPFIFNLKVFCALIYFSTISYVIQIIFINIKVISTKKLFSYHYCVFNFMMGSIVSVIGFVVSFLLVNLLIKPFLVFSTYVIKSKKTFEWYSYFQDIKNEVIIINEKVMQLLDYISPHTIFMRLNFVNISFVIITIALFIALYYFNKIGFWYRKEDIYLSSTNINFSLPISIKAITTIQLKHWISNKEEVNLHKPFFYISYSIWFFLGCLIYFSQMAYNQLANAVIFILILNTITRDSFSAGTDFFTKSLRFDSDRKSIGLYRMSNTDFKQIYDSKLSLIRFIGFKETILAIILLAIFLNQDIYLYIIGFEIIIINTVIIPNLSLLPSYLSPHFNHQHYSELESFEEQIFLEDTVFDKVKNFLSSSYFLILFVGYLSQRNYIDIMIFIIIFNILALILVSLFIRFSKQKITKSWRKRDLYL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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