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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS01160 [old locus tag: SA0196 ]
- pan locus tag?: SAUPAN001051000
- symbol: SA_RS01160
- pan gene symbol?: —
- synonym:
- product: membrane protein
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS01160 [old locus tag: SA0196 ]
- symbol: SA_RS01160
- product: membrane protein
- replicon: chromosome
- strand: +
- coordinates: 231274..231738
- length: 465
- essential: no DEG
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
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421GTGTTAATAATAGGCGGATTATTGGGATGCTTGGTTTATTACTTATTAAATATTGATTTA
GGTAAAATGATAGTTGCTCAAGATTTAAATTTACAAGAGATTTTCTTTCATAATTTAATT
TATTTCTTCTCTGCAATATTTGGTTTTCTGACACTTGGTCTGTTAAATATAGGTATGTTA
CTCATAAATTCTGGGATGTTAGGCTTTTTTATAGCACATGGAATCTATAGCAATCAATTA
AAATCTATTCTATTAGTATTAGCGCCACACGCTATATTTGAGATTTTAGCACTTTTAATT
GCTTCAACATTCTCATTAGGTTTTTTATCATACCTTTATCAAAGAATGGTAAAGAAAAAT
AAAATAAAAAATAAGATGTTCCATAATTTTGTAACAACAATAATAACTGTTATTGTATTA
ACAATAATCGCATCATTATTAGAAGTTTATGTAACCATAAATTAA60
120
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465
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS01160 [old locus tag: SA0196 ]
- symbol: SA_RS01160
- description: membrane protein
- length: 154
- theoretical pI: 9.34459
- theoretical MW: 17310.9
- GRAVY: 1.15584
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SA0196
- PFAM: no clan defined SpoIIM; Stage II sporulation protein M (PF01944; HMM-score: 55.2)and 3 moreGlycophorin_A; Glycophorin A (PF01102; HMM-score: 11.5)Cytochrom_B_C; Cytochrome b(C-terminal)/b6/petD (PF00032; HMM-score: 8.4)Sgf11_N; SAGA-associated factor 11 N-terminal domain (PF18519; HMM-score: 6.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0004
- Cytoplasmic Membrane Score: 0.9968
- Cell wall & surface Score: 0
- Extracellular Score: 0.0028
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.021868
- TAT(Tat/SPI): 0.000167
- LIPO(Sec/SPII): 0.013387
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLIIGGLLGCLVYYLLNIDLGKMIVAQDLNLQEIFFHNLIYFFSAIFGFLTLGLLNIGMLLINSGMLGFFIAHGIYSNQLKSILLVLAPHAIFEILALLIASTFSLGFLSYLYQRMVKKNKIKNKMFHNFVTTIITVIVLTIIASLLEVYVTIN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]