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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS02560 [old locus tag: SA0444 ]
  • pan locus tag?: SAUPAN002221000
  • symbol: SA_RS02560
  • pan gene symbol?: —
  • synonym:
  • product: initiation-control protein YabA

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS02560 [old locus tag: SA0444 ]
  • symbol: SA_RS02560
  • product: initiation-control protein YabA
  • replicon: chromosome
  • strand: +
  • coordinates: 516475..516822
  • length: 348
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (516475..516822) NCBI
  • BioCyc: SA_RS02560 BioCyc
  • MicrobesOnline: see SA0444

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    TTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTT
    TCAAAGGAAACTTCAGAATTAAAGGCACATGCAGTTGAATTAGTAGAAGAAAATGTAGCG
    CTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAATGATGAACCAACTACTATT
    GATACTGCGAATTCAAAACCAGCAAAAGCTGTGAAAAAGCCATTACCAAGTAAAGATAAT
    TTGGCTATATTGTATGGAGAAGGATTTCATATTTGTAAAGGCGAATTATTTGGAAAACAT
    CGACATGGTGAAGATTGTCTGTTCTGTTTAGAAGTTTTAAGTGATTAA
    60
    120
    180
    240
    300
    348

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS02560 [old locus tag: SA0444 ]
  • symbol: SA_RS02560
  • description: initiation-control protein YabA
  • length: 115
  • theoretical pI: 4.99887
  • theoretical MW: 12949.7
  • GRAVY: -0.487826

⊟Function[edit | edit source]

  • TIGRFAM:
    SH3 domain protein (TIGR04211; HMM-score: 12.8)
  • TheSEED: see SA0444
  • PFAM:
    no clan defined YabB; Initiation control protein YabA (PF06156; HMM-score: 106.9)
    and 8 more
    TSC22; TSC-22/dip/bun family (PF01166; HMM-score: 17)
    KASH_CCD; Coiled-coil region of CCDC155 or KASH (PF14662; HMM-score: 16.1)
    ZapB; Cell division protein ZapB (PF06005; HMM-score: 15.9)
    FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 14.4)
    no clan defined Cnn_1N; Centrosomin N-terminal motif 1 (PF07989; HMM-score: 13.6)
    Spc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 13.4)
    bZIP (CL0018) bZIP_1; bZIP transcription factor (PF00170; HMM-score: 10.8)
    no clan defined NYD-SP28_assoc; Sperm tail C-terminal domain (PF14775; HMM-score: 9.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009896
    • TAT(Tat/SPI): 0.000757
    • LIPO(Sec/SPII): 0.000429
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDRNEIFEKIMRLEMNVNQLSKETSELKAHAVELVEENVALQLENDNLKKVLGNDEPTTIDTANSKPAKAVKKPLPSKDNLAILYGEGFHICKGELFGKHRHGEDCLFCLEVLSD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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