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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03115 [old locus tag: SA0537 ]
  • pan locus tag?: SAUPAN002357000
  • symbol: SA_RS03115
  • pan gene symbol?: pdxK
  • synonym:
  • product: hydroxymethylpyrimidine/phosphomethylpyrimidine kinase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03115 [old locus tag: SA0537 ]
  • symbol: SA_RS03115
  • product: hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
  • replicon: chromosome
  • strand: -
  • coordinates: 631344..632174
  • length: 831
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (631344..632174) NCBI
  • BioCyc: G1G21-610 BioCyc
  • MicrobesOnline: see SA0537

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGCTTTAAAGAAAGTTTTAACAATTGCCGGTTCTGACACAAGTGCTGGCGCAGGTATG
    CAAGCAGATTTGAAAACGTTCCAAGAATTAGATACGTATGGCATGGTCGCTTTAACTGCC
    ATCGTTACTATGGATAAAGATACATGGTCACACGATGTTACACCATTACCAATGGATGTA
    TTTGAAAAACAACTTGAAACGGCTTTATCAATCGGACCTGATGCTATTAAAACAGGTATG
    TTAGGTACTGAGGAGATAATCAAACGTGCTGGAGAAGTATATGAGGCATCTAATGCACAA
    TATTTTGTAGTAGATCCTGTCATGGTTTGTAAAGGCGAAGATGAAGTGCTTAATCCTGGA
    AATACTGAGGCGATGATTAAATATTTACTACCTAAAGCAACGGTAGTGACACCAAACTTA
    TTTGAAGCGGGTCAATTATCAGGATTAGGTAAATTAAATTCAATTGAAGATATGAAAAAG
    GCTGCAACAATTATCTTTGATAAAGGCGCACAGCATGTCATCATTAAAGGTGGCAAAGCT
    TTAGATCAAGATAAATCGTATGACTTATACTATGATGGTCAAACATTTTATCAACTAACA
    ACAGACATGTTCCAACAAAGTTATAACCATGGTGCTGGTTGTACATTTGCTGCGGCAACA
    ACTGCATATTTAGCTAACGGTAAGTCACCGAAAGAAGCTGTGATTAGCGCGAAAGCTTTC
    GTCGCTTCTGCTATTAAAAACGGTTGGAAAATGAATGATTTTGTTGGTCCTGTGGATCAC
    GGTGCATACAACCGTATTGAACATATCGATGTTGAAGTAACAGAGGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    831

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS03115 [old locus tag: SA0537 ]
  • symbol: SA_RS03115
  • description: hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
  • length: 276
  • theoretical pI: 4.61494
  • theoretical MW: 29856.8
  • GRAVY: -0.105435

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (TIGR00097; EC 2.7.1.49,2.7.4.7; HMM-score: 235.7)
    and 7 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridoxine pyridoxal kinase (TIGR00687; EC 2.7.1.35; HMM-score: 54.9)
    Metabolism Energy metabolism Sugars ribokinase (TIGR02152; EC 2.7.1.15; HMM-score: 38.4)
    hexose kinase, 1-phosphofructokinase family (TIGR03168; EC 2.7.1.-; HMM-score: 27.2)
    1-phosphofructokinase (TIGR03828; EC 2.7.1.56; HMM-score: 24.1)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides bifunctional protein RfaE, domain I (TIGR02198; EC 2.7.1.-; HMM-score: 20.5)
    Metabolism Energy metabolism Sugars 5-dehydro-2-deoxygluconokinase (TIGR04382; EC 2.7.1.92; HMM-score: 17.6)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides tagatose-6-phosphate kinase (TIGR01231; EC 2.7.1.144; HMM-score: 13.4)
  • TheSEED: see SA0537
  • PFAM:
    Ribokinase (CL0118) Phos_pyr_kin; Phosphomethylpyrimidine kinase (PF08543; HMM-score: 260.5)
    and 1 more
    PfkB; pfkB family carbohydrate kinase (PF00294; HMM-score: 39.4)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.031077
    • TAT(Tat/SPI): 0.001203
    • LIPO(Sec/SPII): 0.007461
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDVFEKQLETALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCKGEDEVLNPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKALDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRIEHIDVEVTEV

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]