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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS03455
- pan locus tag?:
- symbol: SA_RS03455
- pan gene symbol?: —
- synonym:
- product: YitT family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS03455
- symbol: SA_RS03455
- product: YitT family protein
- replicon: chromosome
- strand: +
- coordinates: 696242..697075
- length: 834
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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721
781GTGAATAAAACGGTTAAAGATTTAATACTAGTTGTCTTAGGTTCATTTATCTTTGCTGCA
GGTGTAAATGCATTTATTATTTCTGGTAACTTAGGTGAAGGCGGGGTTACAGGTTTAGCA
ATTATTTTATATTATGCGTTTCATATTTCACCAGCCATCACTAACTTCTTGGTCAACGCA
GTATTGATTGCCATAGGTTATAAATTTTTGAGTAAGAGAAGTATGTACTTAACTATTCTT
GTAACAATTCTTATTTCAATATTTTTGAGTTTAACAGAATCATGGCAAGTAGAAACTGGA
AACAGCATTGTGAATGCCATTTTTGGTGGTGTAAGCGTTGGACTAGGAATCGGAGTAATT
ATCCTTGCAGGCGGTACAACAGCAGGTACAACAATTTTGGCGAGAATTGCAACGAAATAC
CTCGATGTAAGCACGCCATATGCTTTGCTTTTCTTCGATATGATCGTTGTTGCAATTTCA
CTTACAGTTATTCCACTTGATAAAGTATTAGTAACAGTAATATCACTTTATATAGGAACA
AAAGTGATGGAATATGTCATAGAAGGTTTAAACACTAAAAAAGCTATGACGATTATTTCA
ACTAATCCCGACAAACTTGCCAAAGCAATAGACGAGCAAATTGGAAGAGGTTTAACCATT
TTAAACGGACATGGCTATTATACGCGTGAAGAAAAAGATGTCTTATACGTTGTTATTTCT
AAAACACAAGTTTCAAAAGCAAAGCGATTAATTAAACAAATCGATAAAGATGCATTCCTC
GTAATTCATGATGTAAGAGATGTCTATGGTAATGGCTTTCTTGCAGATGAATAA60
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834
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS03455
- symbol: SA_RS03455
- description: YitT family protein
- length: 277
- theoretical pI: 9.04665
- theoretical MW: 29917.1
- GRAVY: 0.708664
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: no clan defined YitT_membrane; Uncharacterised 5xTM membrane BCR, YitT family COG1284 (PF02588; HMM-score: 198.6)and 3 moreGlnB-like (CL0089) DUF2179; Uncharacterized protein conserved in bacteria (DUF2179) (PF10035; HMM-score: 77.3)no clan defined ODV-E18; Occlusion-derived virus envelope protein ODV-E18 (PF10717; HMM-score: 6.7)DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 5.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.13398
- TAT(Tat/SPI): 0.001159
- LIPO(Sec/SPII): 0.095849
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNKTVKDLILVVLGSFIFAAGVNAFIISGNLGEGGVTGLAIILYYAFHISPAITNFLVNAVLIAIGYKFLSKRSMYLTILVTILISIFLSLTESWQVETGNSIVNAIFGGVSVGLGIGVIILAGGTTAGTTILARIATKYLDVSTPYALLFFDMIVVAISLTVIPLDKVLVTVISLYIGTKVMEYVIEGLNTKKAMTIISTNPDKLAKAIDEQIGRGLTILNGHGYYTREEKDVLYVVISKTQVSKAKRLIKQIDKDAFLVIHDVRDVYGNGFLADE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.