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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03560 [old locus tag: SA0621 ]
  • pan locus tag?: SAUPAN002546000
  • symbol: SA_RS03560
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03560 [old locus tag: SA0621 ]
  • symbol: SA_RS03560
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 716845..717489
  • length: 645
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (716845..717489) NCBI
  • BioCyc: SA_RS03560 BioCyc
  • MicrobesOnline: see SA0621

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGTCGCAAAATACAAATCATTCATATTATCATCAAAACCAGCATGCTCAATCAATAAGT
    AAAGTGTGGCTTTATTTTATGTATTATTGGATTATATTTGGCATAGGATGCTATCTAGGT
    CAGTTTTTACCATTAAGTTGGCGACAACCCTTGTCATTTGGATTACTGATTATTATTTTA
    GCAACACTTGTTTTTGAAAGAGCGAGACGGTTCGGTTTAATTATTTCACATATTTACGCT
    GTAGTGATTGGCTTATTGTCATACGCAACGTTTACCACGTATTTACAAAATTTAGGACCA
    GATATTTTCTATAAAAATATCGCATTAGCAATTTTTGCATTTATAGCATTTGGTATTATT
    GGTTATTTCTTCGTTGGAGATGCATCGAGTATAGGCAAATATTTATTCGTTACATTAATA
    ACATTAATTATTGCGAGTCTAATTGGTATTTTTCTTCAAAATCCTATTTTTTACACTATT
    ATTACCGTCGTTAGTCTGTTGTTATTTCTACTTTATACTTTGTATGATTTTAATCGTTTA
    AAAAGAGGTGACTATTCACCAAGAGAAATGGGATTTAATCTATTTATTAATTTGTTGAAT
    ATTATTAAGGATATACTTTACCTTGCTAATATGTTCAGAAGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    645


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS03560 [old locus tag: SA0621 ]
  • symbol: SA_RS03560
  • description: hypothetical protein
  • length: 214
  • theoretical pI: 9.69029
  • theoretical MW: 24867.3
  • GRAVY: 0.752804

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0621
  • PFAM:
    Apoptosis-Inhib (CL0453) Bax1-I; Inhibitor of apoptosis-promoting Bax1 (PF01027; HMM-score: 85.3)
    and 4 more
    no clan defined PhoR; Phosphate regulon sensor protein PhoR (PF11808; HMM-score: 13.4)
    TgpA_N; TgpA N-terminal domain (PF11992; HMM-score: 12.1)
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 7.8)
    DUF4191; Domain of unknown function (DUF4191) (PF13829; HMM-score: 6.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9782
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0218
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002049
    • TAT(Tat/SPI): 0.000315
    • LIPO(Sec/SPII): 0.245105
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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