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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03980 [old locus tag: SA0699 ]
  • pan locus tag?: SAUPAN002651000
  • symbol: SA_RS03980
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03980 [old locus tag: SA0699 ]
  • symbol: SA_RS03980
  • product: membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 797523..798017
  • length: 495
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (797523..798017) NCBI
  • BioCyc: SA_RS03980 BioCyc
  • MicrobesOnline: see SA0699

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGCTATTTTATTTATTTCATTTTACAATCAGCTTTATATCAACAGTACTTTTCTCTATC
    ATTTTCAATGCACCCAAACGCCTCTTAGTAGCATGTGGATTTGTAGGTGCCATTGCATGG
    ACGATTTACCAATTAACGGTAGATTTAGAGTTTGGAAAAGTTGGCGCTTCATTTTTGGGA
    AGCTTAATTTTAGGCTTAATGAGTCATACTATGAGTCGCAGATATAAACGACCGGTAATT
    ATATTCATAGTACCAGGCATTATACCATTAGTACCTGGTGGTGCAGCTTATCAAGCGACT
    CGTTTTTTAGTATCGAATGATTATACAAGTGCTGTAAATACATTTTTAGAAGTTACACTG
    ATTTCAGGTGCGATTGCTTTCGGTATATTAGTTTCTGAAATTCTATATTACCTATACACA
    CGTATCAAACAACTGTATGGTAAAATCAAAGGTAAGACATATAAAAAATCTTACAACATG
    AATAATAGAGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    495


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS03980 [old locus tag: SA0699 ]
  • symbol: SA_RS03980
  • description: membrane protein
  • length: 164
  • theoretical pI: 10.3085
  • theoretical MW: 18389.8
  • GRAVY: 0.64878

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0699
  • PFAM:
    ThrE (CL0470) ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 137.2)
    and 4 more
    ThrE; Putative threonine/serine exporter (PF06738; HMM-score: 36.4)
    no clan defined PhoR; Phosphate regulon sensor protein PhoR (PF11808; HMM-score: 9.5)
    TcpE; TcpE family (PF12648; HMM-score: 8.9)
    DUF6057; Family of unknown function (DUF6057) (PF19529; HMM-score: 8.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0004
    • Cytoplasmic Membrane Score: 0.9992
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0004
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018194
    • TAT(Tat/SPI): 0.000675
    • LIPO(Sec/SPII): 0.043159
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLFYLFHFTISFISTVLFSIIFNAPKRLLVACGFVGAIAWTIYQLTVDLEFGKVGASFLGSLILGLMSHTMSRRYKRPVIIFIVPGIIPLVPGGAAYQATRFLVSNDYTSAVNTFLEVTLISGAIAFGILVSEILYYLYTRIKQLYGKIKGKTYKKSYNMNNRV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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