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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03985 [old locus tag: SA0700 ]
  • pan locus tag?: SAUPAN002652000
  • symbol: SA_RS03985
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03985 [old locus tag: SA0700 ]
  • symbol: SA_RS03985
  • product: membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 798035..798796
  • length: 762
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (798035..798796) NCBI
  • BioCyc: SA_RS03985 BioCyc
  • MicrobesOnline: see SA0700

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCCAGATTCAATCACAATTATAGATGAAAACAAAGTGATTGATGTTGTATTAATTGCA
    GGTAGAATTTTACTTGAATCAGGTGCTGAAACATATCGAGTTGAAGATACAATGAACCGT
    ATCGCACATAGTTATGGTCTTCATAATACATATAGTTTTGTCAGTTCAACTGCAATTATT
    TTTTCATTAAACGATCGAACAAGTACAAGATTAATTCGTGTACAAGAGCGTACAACAGAT
    TTAGAGAAAATCGCTTTAACGAATAGTCTTTCACGTAAAATATCAAATAAAGAACTCACA
    ATTGATGAAGCTAAATCTGAATTTATTCATTTACAGCATGCATCATTACAATATTCTTTT
    TTAACGAATTTCTTTGCAGCTGCCATTGCATGTGGCTTCTTCCTATTTATGTTTGGTGGT
    GTCGCATCAGATTGTTGGATTGCAGTCATTGCTGGTGGATCCGCATTTTTAACATTCAGC
    TTTGTGCAACGCTATATACAAATTAAATTTTTCTCAGAGTTTGTTGCAGCTGCTGTGGTC
    ATATCCATTGCAGCCACATTTACTAAATTAGGCATTGCAACCAATCAAGATATCATTACT
    ATAGCCAGTGTCATGCCACTTGTCCCTGGTATATTAATTACCAATGCCATTCGAGATTTA
    TTAGCGGGTGAATTACTTGCAGGTATGTCTCGAGGTGTTGAAGCTGCATTAACAGCATTC
    GCAATCGGTGCTGGTGTCGCAATCGTTTTATTAATCATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    762

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS03985 [old locus tag: SA0700 ]
  • symbol: SA_RS03985
  • description: membrane protein
  • length: 253
  • theoretical pI: 5.65611
  • theoretical MW: 27426.7
  • GRAVY: 0.647036

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0700
  • PFAM:
    UMP_1 (CL0470) ThrE; Putative threonine/serine exporter (PF06738; HMM-score: 238.5)
    and 2 more
    ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 41.4)
    no clan defined TcpE; TcpE family (PF12648; HMM-score: 10.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007792
    • TAT(Tat/SPI): 0.000502
    • LIPO(Sec/SPII): 0.001108
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPDSITIIDENKVIDVVLIAGRILLESGAETYRVEDTMNRIAHSYGLHNTYSFVSSTAIIFSLNDRTSTRLIRVQERTTDLEKIALTNSLSRKISNKELTIDEAKSEFIHLQHASLQYSFLTNFFAAAIACGFFLFMFGGVASDCWIAVIAGGSAFLTFSFVQRYIQIKFFSEFVAAAVVISIAATFTKLGIATNQDIITIASVMPLVPGILITNAIRDLLAGELLAGMSRGVEAALTAFAIGAGVAIVLLII

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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