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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS05885
- pan locus tag?:
- symbol: SA_RS05885
- pan gene symbol?: —
- synonym:
- product: S4 RNA-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS05885
- symbol: SA_RS05885
- product: S4 RNA-binding protein
- replicon: chromosome
- strand: +
- coordinates: 1169642..1170448
- length: 807
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTATCAACACTTTAGA
CAGGAAGAATACGAATTAATTGATCAGCTAACGGATAAATGTGATCAAGCGGAACAACAT
TATGCACCAGTATTAACGCATTTTTTAGATCCAAGAGGGCAATATATATTGGAAGTGATT
TGTGGCAGTTATGAAGATTTAAACGTCTCTTTTTATGGCGGGCCTAATGCTGAAAGAAAA
AGAGCAATCATTTCGCCGAACTATTATGAACCTAAAGAAAGTGACTTTGAATTAACTTTA
ATGGAAATAGAGTATCCTGAAAAATTCGTCACTTTAAAACATCAACATATTTTAGGGACA
TTAATGTCTTTAGGTATCGAACGCGAACAAGTTGGAGATATAATTGTGAATGAACGAATT
CAATTTGTTTTGACAAGTAGATTGGAATCATTTATTATGTTAGAATTACAACGTATTAAA
GGCGCATCAGTTAAACTTTATACTATTCCAGTAACAGATATGATACAATCTAATGAGAAT
TGGAAAAATGAAAGTGCAACAGTTAGTTCTTTAAGGTTAGATGTTGTTATTAAAGAAATG
ATACGTAAATCACGTACGATTGCGAAACAACTAATTGAAAAAAAACGTGTTAAAGTGAAT
CACACTATTGTTGATTCAGCAGATTTTCAATTACAAGCAAATGATTTAATATCCATCCAA
GGTTTTGGTAGAGCACACATTACTGACTTAGGTGGTAAAACTAAAAAAGATAAAACGCAC
ATTACCTATAGAACATTATTCAAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS05885
- symbol: SA_RS05885
- description: S4 RNA-binding protein
- length: 268
- theoretical pI: 6.72688
- theoretical MW: 31214.7
- GRAVY: -0.312313
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism Photosynthesis photosystem II S4 domain protein (TIGR03069; HMM-score: 92.7)and 3 moreProtein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS4 (TIGR01017; HMM-score: 25.8)Protein synthesis tRNA and rRNA base modification pseudouridine synthase, RluA family (TIGR00005; EC 5.4.99.-; HMM-score: 15.4)Unknown function General TlyA family rRNA methyltransferase/putative hemolysin (TIGR00478; HMM-score: 15.2)
- TheSEED:
- PFAM: S4 (CL0492) S4; S4 domain (PF01479; HMM-score: 39.1)and 1 moreno clan defined M11L; Apoptosis regulator M11L like (PF11099; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004921
- TAT(Tat/SPI): 0.000238
- LIPO(Sec/SPII): 0.000493
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MVFYNFFKVVINIDIYQHFRQEEYELIDQLTDKCDQAEQHYAPVLTHFLDPRGQYILEVICGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGTLMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQGFGRAHITDLGGKTKKDKTHITYRTLFK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.