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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS09140 [old locus tag: SA1624 ]
- pan locus tag?: SAUPAN004533000
- symbol: SA_RS09140
- pan gene symbol?: tnp
- synonym:
- product: IS21 family transposase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGAAATTATCTTTAGACATAAATACTGATTTTGAAGTTACTACTCTTACAGATTTACCA
AAATTAAAAATTGTCATGGAGAACTTAAACATGAAAATAAACAAAAGTGAAATAGCGAGA
CACATGGGTGTTTATAGAAGAACAGTTGATAAATATTTAAATGGCTTTGAGCCAACCAAA
AAGAGAAATCGTCAGTCTATTATTGACAAGTATTATCCTATCATCGAAAAATTACTTTCA
GACTCTAGTGAACAAAAGTTCTACTATAAGCTTATTCTTTGGCAATATTTGAAAGATAAA
CATGGATTAACCTGTGCATATTCTACATTTAGAGCTTATATCCTTAAACATGATGAATTT
AATCGTTATTTTATGAAAGGTTATCAACGGTTGTCGCCTAAAGGCAAAACGAGATTCGAG
ACAAAAGCCAGTCATCAAGCACAGTTTGACTGGAAAGAAGGCATTAACTTTAAAACGAAG
GATAATCAAATGGTCCTTTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS09140 [old locus tag: SA1624 ]
- symbol: SA_RS09140
- description: IS21 family transposase
- length: 166
- theoretical pI: 10.1619
- theoretical MW: 19944
- GRAVY: -0.73494
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SA1624
- PFAM: HTH (CL0123) HTH_23; Homeodomain-like domain (PF13384; HMM-score: 23)and 5 moreno clan defined DUF5338; Family of unknown function (DUF5338) (PF17273; HMM-score: 17.3)HTH (CL0123) HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 16.7)no clan defined Phage_NinH; Phage NinH protein (PF06322; HMM-score: 16.1)HTH (CL0123) HTH_29; Winged helix-turn helix (PF13551; HMM-score: 14.4)HTH_Crp_2; Crp-like helix-turn-helix domain (PF13545; HMM-score: 13.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004248
- TAT(Tat/SPI): 0.000149
- LIPO(Sec/SPII): 0.00027
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKLSLDINTDFEVTTLTDLPKLKIVMENLNMKINKSEIARHMGVYRRTVDKYLNGFEPTKKRNRQSIIDKYYPIIEKLLSDSSEQKFYYKLILWQYLKDKHGLTCAYSTFRAYILKHDEFNRYFMKGYQRLSPKGKTRFETKASHQAQFDWKEGINFKTKDNQMVL
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.