PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS10470 [old locus tag: SA1824 ]
• pan locus tag^?: SAUPAN005222000
• symbol: SA_RS10470
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Additional information (user-provided)

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS10470 [old locus tag: SA1824 ]
• symbol: SA_RS10470
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2063659..2064237
• length: 579
• essential: no DEG

⊟Accession numbers

• Location: NC_002745 (2063659..2064237) NCBI
• BioCyc: SA_RS10470 BioCyc
• MicrobesOnline: see SA1824

⊟Phenotype

⊟Additional information (user-provided)

⊟DNA sequence

• 1
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  481
  541
  
  ATGAAAACTGAATCGTACTTTAAAGAATACAACCAATTTGTAATAGATCAACAAAAGGCT
  ATACAAGAATTGGAACAAGAGCGTAATGCATTGGAGAGTAAAATAAAGATAGATAAGTCC
  ACATATAAACAGTTAATCATGGATGGACAAGATGATAAAGCAGATAACCTATATCAAGCA
  ACAGATGCTGATGAAAAGAAACTAAAAGCACTTAATAAACGCTTAGAGACAAAGAAAAGT
  GTGTCGAAAGAAGTTAAATATCAAAAGACAATTGAATTATTAAAACATCAAAGCGAGTTG
  TCATCATTATACGAATCAGAAAAGCAATCAGCTTTAGGTAAATTAAAAAAAGTAGTCGAT
  GCATATAATGAGATCATTGATGAAATAGAAGATATTAATGATAGATATGAAGATGAGCAT
  CAGCAATATGCGAGTATTTATAGTCAAGAACAATTATATGATGATAAAGAGGCTAGGGAA
  GCATTGAATGGCTACTTTAGAGAAAATATATTTACATCATATATTAATGGTAATGATTTG
  CCATACGAACACAATAACAAGTTGTTTTTAAAACGTTAA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  579
  

⊟Protein

⊟General

• locus tag: SA_RS10470 [old locus tag: SA1824 ]
• symbol: SA_RS10470
• description: hypothetical protein
• length: 192
• theoretical pI: 4.85714
• theoretical MW: 22805.2
• GRAVY: -1.12292

⊟Function

• TIGRFAM:
  WXG100 family type VII secretion target (TIGR03930; HMM-score: 14.1)
  and 3 more
  two transmembrane protein (TIGR04527; HMM-score: 11.1)
  Cellular processes Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 8.1)
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 5.8)
• TheSEED: see SA1824
• PFAM:
  VBS-like (CL0705) VBS_C3G9; C3G9 VBS-like domain (PF23742; HMM-score: 15.3)
  AB_hydrolase (CL0028) BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal (PF08840; HMM-score: 13)
  and 5 more
  no clan defined CC_CDK5RAP2; CDK5 regulatory subunit-associated protein 2-like, coiled coil (PF23246; HMM-score: 11.2)
  DUF16; Protein of unknown function DUF16 (PF01519; HMM-score: 10.8)
  SlyX; SlyX (PF04102; HMM-score: 10.6)
  P-loop_NTPase (CL0023) AAA_23; AAA domain (PF13476; HMM-score: 9.5)
  no clan defined crAss001_48; crAss001_48 related protein (PF21825; HMM-score: 8)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.8817
  • Cytoplasmic Membrane Score: 0.0319
  • Cell wall & surface Score: 0.0185
  • Extracellular Score: 0.0679
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005463
  • TAT(Tat/SPI): 0.00053
  • LIPO(Sec/SPII): 0.001091
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446769024 NCBI
• RefSeq: WP_000846280 NCBI
• UniProt: see SA1824

⊟Additional information (user-provided)

⊟Protein sequence

• MKTESYFKEYNQFVIDQQKAIQELEQERNALESKIKIDKSTYKQLIMDGQDDKADNLYQATDADEKKLKALNKRLETKKSVSKEVKYQKTIELLKHQSELSSLYESEKQSALGKLKKVVDAYNEIIDEIEDINDRYEDEHQQYASIYSQEQLYDDKEAREALNGYFRENIFTSYINGNDLPYEHNNKLFLKR

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Additional information (user-provided)

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Additional information (user-provided)

⊟Other information (user-provided)

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications