From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS10620 [old locus tag: SA1850 ]
  • pan locus tag?: SAUPAN005290000
  • symbol: SA_RS10620
  • pan gene symbol?:
  • synonym:
  • product: YeeE/YedE family protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS10620 [old locus tag: SA1850 ]
  • symbol: SA_RS10620
  • product: YeeE/YedE family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2088036..2089064
  • length: 1029
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_002745 (2088036..2089064) NCBI
  • BioCyc: G1G21-2146 BioCyc
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGCAAAGAACAAGATTTTGTTTAACAGGTGGCTTTCGAGATATGTATGTGCAAAAGAAT
    AATAAGATGTTCTATGCATTATTAATCGCTATTACTATTCAAAGTATAGGATTATTGATT
    TTGACGGCAACAGATATTTTACAAATTCCTGCACATAGTTTTCCAATATTGGGAACAATT
    ATAGGTTCTTTTATTTTTGGAATTGGAATAGTATTGGCTGGAGGGTGTGCAACAGGTACT
    TGGTATCGCGCTGGTGAAGGGCTAATTGGTAGTTGGATTGCATTAGTATTATATGCTGTT
    ACTGCAGCAATCACTAAAACAGGGATTTTAAAGCCAGTAATGGATAAAATTAATCAACCA
    ACGAATGTAAATAGTGATATGTCTCAAACAACTGGCATTCCGTTTTGGGGATTAGTCGTT
    ATATTAACTATAATCACCATTTTTCTAGTTGTAAGAACACTCAATAATAAGAAAGTTCGA
    GTTGCTGTTCCAAAACTAAAGCAACGTTATACAGGTATTAGATATTACCTTTTCGAAAAA
    CGATACCATCCATTTATTGCAGCAATTGTAATTGGACTTATCGCACTCTTAGCTTGGCCA
    ATGAGTGCATCAACTGGAAGAAATGACGGTTTAGGTATAACAACGCCTTCAGCAAATTTA
    GTACACTTTTTGATTACAGGTGAAACTAAATTTATTGATTGGGGTGTCTTTTTAGTTCTA
    GGAATTTTCATTGGTTCATATATTGCAGCTAGAGGATCAAGAGAATTTAAATGGCGATTG
    CCAGACAAGATTACAATACGAAACAGTGCCATTGGTGGCATATGTATGGGATTTGGTGCG
    TCAGTTGCTGGTGGTTGTTCTATCGGTAACGGTTTGGTTGAAACGGCAACGATGACTTGG
    CAAGGATGGATTGCGCTAGCATCGATGATAGTTGGTGTATGGACAATGAGTCATTTTATC
    TTTGTTCGTCCAATGAAAAAAGTACAACAACAATCCGCAAAGGTTAAACAGCAAACGCAA
    ATAGTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1029

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS10620 [old locus tag: SA1850 ]
  • symbol: SA_RS10620
  • description: YeeE/YedE family protein
  • length: 342
  • theoretical pI: 10.7059
  • theoretical MW: 37430.2
  • GRAVY: 0.52807

Function[edit | edit source]

  • TIGRFAM:
    putative selenium metabolism protein, YedE family (TIGR04112; HMM-score: 44.3)
    and 2 more
    Hypothetical proteins Conserved TIGR00701 family protein (TIGR00701; HMM-score: 11.9)
    tandem five-TM protein (TIGR01218; HMM-score: 8.3)
  • TheSEED:
  • PFAM:
    no clan defined Sulf_transp; Sulphur transport (PF04143; HMM-score: 332.7)
    and 1 more
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 5.9)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017321
    • TAT(Tat/SPI): 0.000391
    • LIPO(Sec/SPII): 0.00982
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_072414299 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MQRTRFCLTGGFRDMYVQKNNKMFYALLIAITIQSIGLLILTATDILQIPAHSFPILGTIIGSFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALVLYAVTAAITKTGILKPVMDKINQPTNVNSDMSQTTGIPFWGLVVILTIITIFLVVRTLNNKKVRVAVPKLKQRYTGIRYYLFEKRYHPFIAAIVIGLIALLAWPMSASTGRNDGLGITTPSANLVHFLITGETKFIDWGVFLVLGIFIGSYIAARGSREFKWRLPDKITIRNSAIGGICMGFGASVAGGCSIGNGLVETATMTWQGWIALASMIVGVWTMSHFIFVRPMKKVQQQSAKVKQQTQIV

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]