From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS11775 [old locus tag: SA2049 ]
  • pan locus tag?: SAUPAN005704000
  • symbol: SA_RS11775
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS11775 [old locus tag: SA2049 ]
  • symbol: SA_RS11775
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2308998..2309387
  • length: 390
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2308998..2309387) NCBI
  • BioCyc: SA_RS11775 BioCyc
  • MicrobesOnline: see SA2049

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAAATGGACCAAAATTATCTTTAGCACTTATAGGTATCTTTTTAATACTTTGTGAG
    TTTTTCTATGGCATTCCTTTTTTAGGTGCAACGTTTATTTTAAGTTTTGGATGGCAGCCT
    TTACTCTTTAATGCATTACTTTATCTAATTCTTACTATTATATTATTAGTGAATAGACAA
    AATGCGATTAGACCTATAGCGATTATTCCAATATTTGGTATAGTAGGTAGTTTTTTAGCT
    ATCATCCCCTTCTTAGGAATTTTGATTCATTGGATTTTATTTTTCCTAATGATTCTATTT
    GTCCTAGTTGTATTATCAGCGCCAACCTATATACCTAATAAAAATGCTCGTGTCATTTAC
    ACACAATACAAAGATGGACATAGAGAATAA
    60
    120
    180
    240
    300
    360
    390

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS11775 [old locus tag: SA2049 ]
  • symbol: SA_RS11775
  • description: hypothetical protein
  • length: 129
  • theoretical pI: 10.0707
  • theoretical MW: 14637.8
  • GRAVY: 1.2093

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ECF transporter T component CbiQ (TIGR02454; HMM-score: 3.9)
  • TheSEED: see SA2049
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003762
    • TAT(Tat/SPI): 0.000281
    • LIPO(Sec/SPII): 0.114957
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKNGPKLSLALIGIFLILCEFFYGIPFLGATFILSFGWQPLLFNALLYLILTIILLVNRQNAIRPIAIIPIFGIVGSFLAIIPFLGILIHWILFFLMILFVLVVLSAPTYIPNKNARVIYTQYKDGHRE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS11775&oldid=88022"