Jump to navigation
Jump to search
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS12430 [old locus tag: SA2164 ]
- pan locus tag?: SAUPAN005894000
- symbol: SA_RS12430
- pan gene symbol?: —
- synonym:
- product: phage infection protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA_RS12430 [old locus tag: SA2164 ]
- symbol: SA_RS12430
- product: phage infection protein
- replicon: chromosome
- strand: -
- coordinates: 2430705..2431982
- length: 1278
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261ATGAATATATTTAAAAATAAATTATTATGGATTGCGCCAATAGCAACTATGATTATCTTG
GTAATCTTTTCTTTAGCTTTTTATCCTGCATATAATCCTAAACCAAAAGATTTACCAATT
GGTATATTAAACGAGGATAAAGGTACAACGATTCAAGATAAAAATGTTAACATTGGTAAA
AAATTAGAGGATAAATTATTAGATAGTGATTCTAATAAAATTAAATGGGTTAAGGTTGAT
AGTGAAAAAGACCTTGAAAAAGATTTGAAAGATCAAAAAATCTTTGGAGTAGCTATTATT
GATAAAGACTTTTCAAAAGATGCTATGAGTAAAACACAAAAAGTAGTTATGGATAGTAAA
AAAGAAGAAATGCAACAAAAAGTTGCTTCAGGTGAAATTCCGCCACAAGTGGTTCAACAA
ATGAAACAAAAAATGGGGAATCAACAAGTAGAGGTTAAGCAGGCTAAATTTAAAACGATT
GTAAGTGAAGGATCAAGCTTACAAGGTTCACAAATTGCATCAGCTGTGTTAACTGGTATG
GGTGATAATATTAATGCTCAAATTACGAAGCAAAGTTTGGAAACATTAACGAGTCAAAAT
GTTAAAGTCAATGCCGCGGACATCAATGGTTTGACGAATCCAGTAAAAGTGGATAATGAA
AAACTTAATAAAGTTAAAGATCACCAAGCAGGTGGTAATGCACCATTCCTAATGTTTATG
CCAATTTGGATAGGTTCAATCGTAACGTCTATCTTATTGTTCTTTGCATTTAGAACTAGT
AACAATATCGTCGTGCAACATCGTATCATTGCTTCAATTGGACAGATGATATTTGCAGTT
GTTGCAGCATTTGCAGGTAGCTTTGTTTATATTTATTTCATGCAAGGCGTTCAAGGATTT
GATTTTGACCATCCAAATCGTATCGCAATTTTTGTAGCATTTGCGATTCTTGGTTTCGTG
GGCCTTATTTTAGGTGTTATGGTATGGCTAGGTATGAAGTCAGTTCCAATTTTCTTCATT
TTAATGTTCTTTAGTATGCAACTTGTAACGTTACCTAAACAAATGTTGCCTGAAAGTTAT
CAAAAATATGTATATGATTGGAATCCATTCACACACTATGCAACAAGTGTAAGAGAACTA
TTATACTTGAATCATCATATTGAATTAAATAGTACAATGTGGATGTTTATAGGGTTTATG
ATTTTTGGCGCTGTATCAAGTTTAGTTTCAGCTATTGTTAGAAAACATAGCACAAAACGT
ACTGAAGTGCCGTCATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1278
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS12430 [old locus tag: SA2164 ]
- symbol: SA_RS12430
- description: phage infection protein
- length: 425
- theoretical pI: 9.91365
- theoretical MW: 47727.7
- GRAVY: 0.107294
⊟Function[edit | edit source]
- TIGRFAM: YhgE/Pip N-terminal domain (TIGR03061; HMM-score: 71.6)and 4 moreYhgE/Pip C-terminal domain (TIGR03062; HMM-score: 57.2)type VII secretion protein EsaA (TIGR03929; HMM-score: 25.3)Protein synthesis tRNA and rRNA base modification tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain (TIGR03197; HMM-score: 17.7)ferredoxin-type protein, NapH/MauN family (TIGR02163; HMM-score: 12.8)
- TheSEED: see SA2164
- PFAM: ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 89.5)and 2 moreno clan defined DUF1598; Protein of unknown function (DUF1598) (PF07643; HMM-score: 14.9)NADP_Rossmann (CL0063) Methyltransf_18; Methyltransferase domain (PF12847; HMM-score: 14.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.403898
- TAT(Tat/SPI): 0.001497
- LIPO(Sec/SPII): 0.027886
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNIFKNKLLWIAPIATMIILVIFSLAFYPAYNPKPKDLPIGILNEDKGTTIQDKNVNIGKKLEDKLLDSDSNKIKWVKVDSEKDLEKDLKDQKIFGVAIIDKDFSKDAMSKTQKVVMDSKKEEMQQKVASGEIPPQVVQQMKQKMGNQQVEVKQAKFKTIVSEGSSLQGSQIASAVLTGMGDNINAQITKQSLETLTSQNVKVNAADINGLTNPVKVDNEKLNKVKDHQAGGNAPFLMFMPIWIGSIVTSILLFFAFRTSNNIVVQHRIIASIGQMIFAVVAAFAGSFVYIYFMQGVQGFDFDHPNRIAIFVAFAILGFVGLILGVMVWLGMKSVPIFFILMFFSMQLVTLPKQMLPESYQKYVYDWNPFTHYATSVRELLYLNHHIELNSTMWMFIGFMIFGAVSSLVSAIVRKHSTKRTEVPS
⊟Experimental data[edit | edit source]
- experimentally validated: data available for COL, NCTC8325
- protein localization: data available for COL
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]