From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12830 [old locus tag: SA2234 ]
  • pan locus tag?: SAUPAN005997000
  • symbol: SA_RS12830
  • pan gene symbol?: opuCD
  • synonym:
  • product: amino acid ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12830 [old locus tag: SA2234 ]
  • symbol: SA_RS12830
  • product: amino acid ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 2509481..2510176
  • length: 696
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2509481..2510176) NCBI
  • BioCyc: SA_RS12830 BioCyc
  • MicrobesOnline: see SA2234

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGGAAGGTAATTTATTACAGCAATTATTCAATTATTATGTTACGAACTTTGGTTATCTA
    TGGGATTTATTTTTCAAACACTTATTAATGTCTGTCTATGGTGTGCTGTTTGCAGCTTTA
    ATTGGTATTCCATTGGGAATCTTGCTTGCAAGATACACAAAACTTTCTGGATTTGTAATT
    ACAATTGCAAATATAATTCAAACAGTTCCAGTCATTGCAATGTTAGCTATTTTAATGTTA
    GTCATGGGCTTAGGTTCAGAAACAGTAGTTTTAACAGTGTTTTTATATGCGTTACTTCCA
    ATTATAAAAAACACTTATACTGGTATAGCTAGTGTTGATGCGAATATTAAGGATGCTGGC
    AAAGGTATGGGAATGACACGCAATCAAGTGCTACGAATGATTGAATTACCGTTATCTGTT
    TCGGTTATTATCGGTGGCATTCGTATTGCCTTGGTTGTTGCGATAGGTGTTGTTGCCGTT
    GGATCATTTATAGGAGCACCTACGCTTGGTGACATTGTGATTCGTGGTACAAATGCGACG
    GATGGCACAACGTTTATTTTAGCAGGTGCGATTCCGATTGCTATCATTGCAATCGTCATT
    GATGTACTATTAAGATTTTTAGAAAAACGATTAGACCCAACAACACGACATCGTAAAAAT
    CAATCTAATCATCGGCCGCAAAGTATTAATATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    696

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12830 [old locus tag: SA2234 ]
  • symbol: SA_RS12830
  • description: amino acid ABC transporter permease
  • length: 231
  • theoretical pI: 10.1502
  • theoretical MW: 25025.9
  • GRAVY: 0.844156

⊟Function[edit | edit source]

  • TIGRFAM:
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 86.1)
    and 10 more
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, permease protein (TIGR01183; HMM-score: 44.7)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 32.3)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 31.7)
    NifC-like ABC-type porter (TIGR01581; HMM-score: 22)
    2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 19.6)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 18.4)
    Cellular processes Cellular processes Pathogenesis autotransporter-associated beta strand repeat (TIGR02601; HMM-score: 10)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking autotransporter-associated beta strand repeat (TIGR02601; HMM-score: 10)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 9.6)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides celllulose biosynthesis operon protein BcsF/YhjT (TIGR03493; HMM-score: 5.4)
  • TheSEED: see SA2234
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 78.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001453
    • TAT(Tat/SPI): 0.000164
    • LIPO(Sec/SPII): 0.001504
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEGNLLQQLFNYYVTNFGYLWDLFFKHLLMSVYGVLFAALIGIPLGILLARYTKLSGFVITIANIIQTVPVIAMLAILMLVMGLGSETVVLTVFLYALLPIIKNTYTGIASVDANIKDAGKGMGMTRNQVLRMIELPLSVSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNATDGTTFILAGAIPIAIIAIVIDVLLRFLEKRLDPTTRHRKNQSNHRPQSINM

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS12830&oldid=102297"