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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS14225 [old locus tag: SA2487 ]
  • pan locus tag?: SAUPAN006457000
  • symbol: SA_RS14225
  • pan gene symbol?: rarD
  • synonym:
  • product: protein RarD

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS14225 [old locus tag: SA2487 ]
  • symbol: SA_RS14225
  • product: protein RarD
  • replicon: chromosome
  • strand: -
  • coordinates: 2798344..2799252
  • length: 909
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2798344..2799252) NCBI
  • BioCyc: SA_RS14225 BioCyc
  • MicrobesOnline: see SA2487

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGAATATAGAATATAAAAAAGGTATATTTTTAGCACTCAGTGCATACATTCTGTGGGGA
    ATACTACCTATATATTGGCAGTTCGTTGATGCAATAGGCGCATTTGAAATTTTAGCCTTT
    CGTATTATATTTTCAGCAATATTCATGATATTCATACTCGCGGTTGGACAAAAACAACGC
    AATGCATTTCAACGAGATATGAATCAATTGTTAGGCAAGCCCATTCAGCTATTAGCGATT
    GTCGTAGCAGGCTATGTCATTACATTAAATTGGGGTACATTTATTTGGGCTGTAACGAAC
    GGTCACGTCCTACAAACAAGTTTAGGTTATTATATAAATCCACTTGTTAGCATTTTGCTC
    GCACTTATCTTTTTAAAAGAAAGATTCAATAAATTTGAATGGCTAGCCATTTTATTCGCA
    TTCATCGGTGTATTATATATGACGCTCAAGATTGGAGAATTCCCAATCGTTTCTATTATA
    TTAGCGTTATCCTTTGGTACATATGGATTATTGAAAAAAGTAGTACATATTGATGCCATC
    AGCAGTATTACGATTGAATGTATTGTTACAGCACCTGCTGGACTAATATACGTTATTTAT
    TTATGGCAGCAACATCAGATGTCATTTGGATTGAACATGTCATCATTTTGGTTGTTATTT
    TCTGGTGCTATTACGGCAATACCACTAATCCTATTCTCAGCCGGGGCAAAACGTATTCCA
    CTTTCGCTAATAGGATTTATTCAATACGTTGGACCAACAATAATGTTTGTACTCGGCATA
    TTTGTTTTCAAAGAGCCTTTTAGTATAGATCAATTAATTACGTTTATATTTATTTGGACA
    GGTATTGTGTTATATAGTCTTTCTCAATACATTAAATTGAAGAAACATCCGGTCGCAAAA
    ACCCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    909

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS14225 [old locus tag: SA2487 ]
  • symbol: SA_RS14225
  • description: protein RarD
  • length: 302
  • theoretical pI: 9.93378
  • theoretical MW: 34145.9
  • GRAVY: 0.988079

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate protein RarD (TIGR00688; HMM-score: 210.5)
    and 1 more
    Metabolism Transport and binding proteins Amino acids, peptides and amines carboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 38)
  • TheSEED: see SA2487
  • PFAM:
    DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 90.2)
    and 1 more
    no clan defined RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 6.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005526
    • TAT(Tat/SPI): 0.000568
    • LIPO(Sec/SPII): 0.002492
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNIEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIPLSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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