From AureoWiki
Jump to navigation Jump to search

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0907 [new locus tag: NWMN_RS05080 ]
  • pan locus tag?: SAUPAN003236000
  • symbol: NWMN_0907
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0907 [new locus tag: NWMN_RS05080 ]
  • symbol: NWMN_0907
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1005559..1005936
  • length: 378
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAATGTTGGAGGTGACATGATGAAATTAGGTATGCTTTTAATTAGATGGATGTTAGCA
    ACATCATTCTTAGTGCATGGTACTTTGAAATTTGTTGATTTAGATGGAACAATTCACTTC
    TTAGGCTCTTTAGGTTTACCACCTACCATCGCAGTATTGATGTCAATTGGTGAAGTTGTT
    GGAGGTTTAGCACTTATTATCGGCTTTTTAACGCCTTATGTTAATGTTTTTTATATTTGT
    GTTATGTTAGGCTCAATCTTCACACTTAAACTTACAAGAGGATATGTAAGTGGTTATGAA
    TTTGAAATCATACATATCGTAATGAACTTAGCTTGTATTAGTAGTTACAGCTGGAAGAAA
    TGGCTACAATTTTATTAA
    60
    120
    180
    240
    300
    360
    378

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0907 [new locus tag: NWMN_RS05080 ]
  • symbol: NWMN_0907
  • description: hypothetical protein
  • length: 125
  • theoretical pI: 8.21054
  • theoretical MW: 13933.7
  • GRAVY: 0.9352

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    DoxD-like (CL0131) DoxX; DoxX (PF07681; HMM-score: 57.1)
    and 1 more
    DoxX_2; DoxX-like family (PF13564; HMM-score: 29.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.030643
    • TAT(Tat/SPI): 0.000386
    • LIPO(Sec/SPII): 0.027574
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNVGGDMMKLGMLLIRWMLATSFLVHGTLKFVDLDGTIHFLGSLGLPPTIAVLMSIGEVVGGLALIIGFLTPYVNVFYICVMLGSIFTLKLTRGYVSGYEFEIIHIVMNLACISSYSWKKWLQFY

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_0907&oldid=60026"