From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2265 [new locus tag: SA_RS13005 ]
  • pan locus tag?: SAUPAN006049000
  • symbol: SA2265
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2265 [new locus tag: SA_RS13005 ]
  • symbol: SA2265
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2542398..2542910
  • length: 513
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGTTAGTGTTATGGTTTATAATCTATAATGTTCGTAATTACAGATTACAAAAAAATTTC
    ATTTTCCACCACATTTTAGGAGTTACTTTAATGAACAAAAAACATGTTTTTATAATTATT
    GGTGTCATTTTATGTATATGTATAGTTGCATCAGTCATTTATTTAAAAGTGAAATATGAC
    GAAAAAGAAAAACAAAAAGCAATATACTATAAAGAACAACAGGAGCGTATTACACTCTAT
    CTTAATCATAATACTAAAGAACCCAATACCATCAAAACTGTACATTTCACAAGTTTAAAA
    AGAGGACCTATGGGCGATGCAGTAATTGAAGGTTACATAAATGAAAATAAAGAAGATGAT
    TTTGTTGCATATGGGTCTCCAGAACATAATTATCAATTTGGTGGAAGTTTAATCAAAAGT
    AAAAATTTAAGCACGTTATTAAAACCAGTACATCAAACCAAATCACCTGATGAGATAAAA
    AAGGAATTAGAGTCTAAAAAGAACGACCGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    513

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2265 [new locus tag: SA_RS13005 ]
  • symbol: SA2265
  • description: hypothetical protein
  • length: 170
  • theoretical pI: 9.78942
  • theoretical MW: 19932.1
  • GRAVY: -0.376471

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 17.6)
    and 2 more
    Metabolism Energy metabolism Electron transport cytochrome c oxidase, subunit II (TIGR02866; EC 1.9.3.1; HMM-score: 13.5)
    Cellular processes Cellular processes Adaptations to atypical conditions phage shock protein B (TIGR02976; HMM-score: 12.9)
  • TheSEED  :
    • FIG01108221: hypothetical protein
  • PFAM:
    no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 131.3)
    and 6 more
    Viral_Beta_CD; Viral Beta C/D like family (PF04530; HMM-score: 16.5)
    ABC-2 (CL0181) ABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 15.9)
    no clan defined Sec66; Preprotein translocase subunit Sec66 (PF09802; HMM-score: 12.7)
    DUF4500; Domain of unknown function (DUF4500) (PF14937; HMM-score: 12.3)
    DUF3377; Domain of unknown function (DUF3377) (PF11857; HMM-score: 11.7)
    PMP1_2; ATPase proteolipid family (PF08114; HMM-score: 6.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000958
    • TAT(Tat/SPI): 0.00013
    • LIPO(Sec/SPII): 0.005093
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLVLWFIIYNVRNYRLQKNFIFHHILGVTLMNKKHVFIIIGVILCICIVASVIYLKVKYDEKEKQKAIYYKEQQERITLYLNHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDDFVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA2265&oldid=69058"