Jump to navigation
Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS08035 [old locus tag: SACOL1577 ]
- pan locus tag?: SAUPAN004094000
- symbol: SACOL_RS08035
- pan gene symbol?: —
- synonym:
- product: membrane protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS08035 [old locus tag: SACOL1577 ]
- symbol: SACOL_RS08035
- product: membrane protein
- replicon: chromosome
- strand: -
- coordinates: 1611280..1613127
- length: 1848
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801ATGAAGCATAAAAGTGTGTATCTTTTATGCTTTTTAATTTTGCCTATTCTGCTTTTAACA
TCTGTGAGTGCTTACGCTGTTTCTAATCCAGTTGGAGAGCCCTCACATGCAGTTAAGCCC
AAAATTGAAAAGTATGATTTATCACATTATCGTTCAATATATAGTGAAAAAGGCGACTGG
AATCCGTTTGGTCAAGAAGAAATTTCACGACAAATTAATAATGTGTCAGATTTTTTCTTT
TCTATGACTAAGATTTTAGCAGGTGTTACAGATTATGCGATTGAAAATTTATTTCAACTA
GATGTTATTAATGATTTTGCGGATAAAATCGGCGATTTTGTTGGCGATATATATCAAAAG
TTATTGAGTAATTTGGCAATAACATTATTTATTATTGTTTGTTTTAACGCATTTATTATT
TTTAGTGTACAAGGTAATGCAAGAGAAGCATTAAAGCGAGCGTTTTTAATTATGTGTTTG
ATTGGTTTTGGTGTTGGTATACTTGCGAATGCAGGTAATATTATACGTGGTACAAACAAT
ATTGGTAAGGATTTGAATAATATAATTATGAATAGTACATCTTCTATTGATGGGAACATT
GATTATATTCATGAGAATTCAGGTATGAATCATATACGTAATCAATTATTTGATATGACG
ATATATAGAACATATTTAGTAATGAATTATGGAACTGTAGACGAAAAAGAGATAAAAGCA
AAAGGTAAAGACCGTATTGATAACATTTTAAAACAAGATTTTTCAAAAAAAGGACAAGAT
GAGATTGATAAAATTGTAAAAAATGAGGTTGAGAAAAAAGATAATAAATATATGACGCAA
GGTTATGTATTTCAAAAGTTGGCTATTTCAGTTATTGGCTTTATTATTACTGTTTTTATG
TCAATTGTATTTTTATCAATTAGTTTTGCGAAGTTGATTTTTTCTACATTTGCTTTATTT
TTATTCTTATTTTTAGTATTCAGTTGGATAGTGAGTTTTATACCAGGATTTGAATTATCT
GTTTTCTCTGCGTTTGCAAAAACGTTAGGCTATATTATTTTAAGTGCCTGTATGACATTC
TTATTTGTGATAGTTGGTTTGTGTATCAAGCTTGCAAATAGTTTTATTGAACCGGATAGT
CAAAATGCTTATTTTTTAAATTCAATATTTATAATTGTAATATTGTTTGTAATGTATAAA
AAACGGGCTCAAATTATCAATTTTGTAAGTCGTGGTAATATTAGTTTTTCTCCTAGTGCA
ATTGGTGCTGGTGTGATGAATCGAACACAAGAACGTTTTAATAAGATTCGTCATGAACAA
GCGCAAAATAAGAAAGCTAAACGAGAAAATCAAAGAGATGAACCCGCCCCACCACTTCAA
AATGATAATGATTTAAGAAGAAGACAGCAGGATAAACCAATGCCTTTATTTATAAATAAA
GATAATCAAAAAAATGGTAATAAGCGAAGAGAACAACAAGAGTCAATGAATGGTAATGAT
GTAAAATCTGCTTCTGTTGAATCAAATGCAAATGATTATTCTAAACAACCACAAAAAGCA
TCACAGCAAGAGCATCAAGTACGAGAAACAAGACAGCGAAAAGATATACAAAGGTCGCCA
CAAGTGGTTAATCAGCCATTAAATAATGAGAATCATTCAATAAATCGTAAAGAACAGAAG
TCAGTTCAAACTGCTTATGATACTGATGTTCAAAAACGACAAATACAAAATGCGACACAG
AATCAACAAAGTAGACAATCTGGAAATCGTAATCAACCTATTACACGTAATTCTCAGTCA
AAAGACCGTCTAAAAGAGCAAAAGGATATCAATAAGCATGGTAAATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1500
1560
1620
1680
1740
1800
1848
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS08035 [old locus tag: SACOL1577 ]
- symbol: SACOL_RS08035
- description: membrane protein
- length: 615
- theoretical pI: 9.93274
- theoretical MW: 70343.1
- GRAVY: -0.341138
⊟Function[edit | edit source]
- TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 15.6)
- TheSEED: see SACOL1577
- PFAM: no clan defined DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 7.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 26 aa
- SP(Sec/SPI): 0.988915
- TAT(Tat/SPI): 0.001047
- LIPO(Sec/SPII): 0.009236
- Cleavage Site: CS pos: 26-27. AYA-VS. Pr: 0.8288
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEKYDLSHYRSIYSEKGDWNPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDVINDFADKIGDFVGDIYQKLLSNLAITLFIIVCFNAFIIFSVQGNAREALKRAFLIMCLIGFGVGILANAGNIIRGTNNIGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFDMTIYRTYLVMNYGTVDEKEIKAKGKDRIDNILKQDFSKKGQDEIDKIVKNEVEKKDNKYMTQGYVFQKLAISVIGFIITVFMSIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFIPGFELSVFSAFAKTLGYIILSACMTFLFVIVGLCIKLANSFIEPDSQNAYFLNSIFIIVILFVMYKKRAQIINFVSRGNISFSPSAIGAGVMNRTQERFNKIRHEQAQNKKAKRENQRDEPAPPLQNDNDLRRRQQDKPMPLFINKDNQKNGNKRREQQESMNGNDVKSASVESNANDYSKQPQKASQQEHQVRETRQRKDIQRSPQVVNQPLNNENHSINRKEQKSVQTAYDTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQSKDRLKEQKDINKHGK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.