Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004094000
• symbol^?: —
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • Ribonuclease E domain-containing protein
• strand^?: -
• coordinates^?: 4371050..4372897
• synteny block^?: BlockID0031240
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL1577
N315:
—
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_1481
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_12360
JH1:
—
JH9:
—
JKD6008:
SAA6008_02634
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1291
MSHR1132:
SAMSHR1132_15360
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02809 (thrC)
TCH60:
—
TW20:
SATW20_27160
USA300_TCH1516:
USA300HOU_0629
VC40:
—

⊟Genome Viewer

COL chromosome
USA300_FPR3757 chromosome

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEKYDLSHYRSIYSEKGDW
  USA300_FPR3757  MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEKYDLSHYRSIYSEKGDW
                  ************************************************************
  
  COL             NPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDVINDFADKIGDFVGDIYQK
  USA300_FPR3757  NPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDVINDFADKIGDFVGDIYQK
                  ************************************************************
  
  COL             LLSNLAITLFIIVCFNAFIIFSVQGNAREALKRAFLIMCLIGFGVGILANAGNIIRGTNN
  USA300_FPR3757  LLSNLALTLFIIVCFNAFIIFSVQGNAREALKRAFLIMCLIGFGVGILANAGNIIRGTNN
                  ******:*****************************************************
  
  COL             IGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFDMTIYRTYLVMNYGTVDEKEIKA
  USA300_FPR3757  IGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFDMTIYRTYLVMNYGTVDEKEIKA
                  ************************************************************
  
  COL             KGKDRIDNILKQDFSKKGQDEIDKIVKNEVEKKDNKYMTQGYVFQKLAISVIGFIITVFM
  USA300_FPR3757  KGKDRIDNILKLDYDKKSEKELDDIVKDEVEKKNNKYMTQGYVFQKLAISVIGFIITLFM
                  *********** *:.**.:.*:*.***:*****:***********************:**
  
  COL             SIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFIPGFELSVFSAFAKTLGYIILSACMTF
  USA300_FPR3757  SIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFIPGFELSVFSAFAKTLGYIILSACMTF
                  ************************************************************
  
  COL             LFVIVGLCIKLANSFIEPDSQNAYFLNSIFIIVILFVMYKKRAQIINFVSRGNISFSPSA
  USA300_FPR3757  LFVIVGLCIKLANSFIEPDSQNAYFLNSIFIIVILFVMYKKRAQIINFVSRGNISFSPSA
                  ************************************************************
  
  COL             IGAGVMNRTQERFNKIRHEQAQNKKAKRENQRDEPAPPLQNDNDLRRRQQDKPMPLFINK
  USA300_FPR3757  IGAGVMNRTQERFNKIRHEQAQNKKAKRENQRDEPAPPLQNDNDLRRRQQDKPMPLFINK
                  ************************************************************
  
  COL             DNQKNGNKRREQQESMNGNDVKSASVESNANDYSKQPQKASQQEHQVRETRQRKDIQRSP
  USA300_FPR3757  DNQKNGNKRREQQESMNGNDVKSASVESNANNYSKQPQKASQQEHQVRETRQRKDIQRSP
                  *******************************:****************************
  
  COL             QVVNQPLNNENHSINRKEQKSVQTAYDTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQS
  USA300_FPR3757  QVVNQPLNNENHSINRKEQKSVQTAYDTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQS
                  ************************************************************
  
  COL             KDRLKEQKDINKHGK
  USA300_FPR3757  KDRLKEQKDINKHGK
                  ***************