PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000385000
• symbol^?: —
• synonym:
• description^?: MFS transporter

  descriptions from strain specific annotations:

  • MFS transporter
  • permease
  • permease, putative
  • putative permease
  • H+ antiporter protein
  • Macrolide-efflux protein
  • Major Facilitator Superfamily protein
  • major facilitator transporter
  • transport protein
• strand^?: -
• coordinates^?: 393696..394757
• synteny block^?: BlockID0001760
• occurrence^?: in 48% of 33 strains

⊟Orthologs

COL:
SACOL0070
N315:
—
NCTC8325:
SAOUHSC_00042
Newman:
NWMN_0032
USA300_FPR3757:
SAUSA300_0091
04-02981:
—
08BA02176:
C248_0081
11819-97:
—
6850:
RSAU_000038
71193:
ST398NM01_0105
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00560
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00071
LGA251:
SARLGA251_00710
M013:
M013TW_0078
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0062
Mu3:
—
Mu50:
—
MW2:
MW0062
RF122:
—
ST398:
SAPIG0105
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0099
VC40:
SAVC_00185

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTDLLKIKNFRLFFLAEIISAFGVGISTVGANWYLIDKTNDSQLLGIMLALNVLSGFLAS
  NCTC8325        MTDLLKIKNFRLFFLAEIISAFGVGISTVGANWYLIDKTNDSQLLGIMLALNVLSGFLAS
  Newman          MTDLLKIKNFRLFFLAEIISAFGVGISTVGANWYLIDKTNDSQLLGIMLALNVLSGFLAS
  USA300_FPR3757  MTDLLKIKNFRLFFLAEIISAFGVGISTVGANWYLIDKTNDSQLLGIMLALNVLSGFLAS
                  ************************************************************
  
  COL             PIIGGLADKYNRRNIILITYLLQVILYLLIVIALVMIGFETYLVIGFAIVNGIGWTTYMA
  NCTC8325        PIIGGLADKYNRRNIILITYLLQVILYLLIVIALVMIGFETYLVIGFAIVNGIGWTTYMA
  Newman          PIIGGLADKYNRRNIILITYLLQVILYLLIVIALVMIGFETYLVIGFAIVNGIGWTTYMA
  USA300_FPR3757  PIIGGLADKYNRRNIILITYLLQVILYLLIVIALVMIGFETYLVIGFAIVNGIGWTTYMA
                  ************************************************************
  
  COL             TSRSLVKQILKPDQYTDANSLLEISLQTGMFIAGGLSGILYKINGFTLIIAMTIMMFLIS
  NCTC8325        TSRSLVKQILKPDQYTDANSLLEISLQTGMFIAGGLSGILYKINGFTLIIAMTIMMFLIS
  Newman          TSRSLVKQILKPDQYTDANSLLEISLQTGMFIAGGLSGILYKINGFTLIIAMTIMMFLIS
  USA300_FPR3757  TSRSLVKQILKPDQYTDANSLLEISLQTGMFIAGGLSGILYKINGFTLIIAMTIMMFLIS
                  ************************************************************
  
  COL             IFMLFRLHVDKPTHSEEESTNSLLQEYLLGWKFLKDNMMIFIFGVISIIPMVFTMIFNIS
  NCTC8325        IFMLFRLHVDKPTHSEEESTNSLLQEYLLGWKFLKDNMMIFIFGVISIIPMVFTMIFNIS
  Newman          IFMLFRLHVDKPTHSEEESTNSLLQEYLLGWKFLKDNMMIFIFGVISIIPMVFTMIFNIS
  USA300_FPR3757  IFMLFRLHVDKPTHSEEESTNSLLQEYLLGWKFLKDNMMIFIFGVISIIPMVFTMIFNIS
                  ************************************************************
  
  COL             LPGYVYNVLKLSSVQFGFSDMLYGIGGLCAGLISAILSKKISTKVLIFLLYFILVINSAL
  NCTC8325        LPGYVYNVLKLSSVQFGFSDMLYGIGGLCAGLISAILSKKISTKVLIFLLYFILVINSAL
  Newman          LPGYVYNVLKLSSVQFGFSDMLYGIGGLCAGLISAILSKKISTKVLIFLLYFILVINSAL
  USA300_FPR3757  LPGYVYNVLKLSSVQFGFSDMLYGIGGLCAGLISAILSKKISTKVLIFLLYFILVINSAL
                  ************************************************************
  
  COL             FIWINSAFYLFIGSFILGYSISSIRIYMNTAIMNTVSDKYVGRSFTIWTSISLLLQSLIA
  NCTC8325        FIWINSAFYLFIGSFILGYSISSIRIYMNTAIMNTVSDKYVGRSFTIWTSISLLLQSLIA
  Newman          FIWINSAFYLFIGSFILGYSISSIRIYMNTAIMNTVSDKYVGRSFTIWTSISLLLQSLIA
  USA300_FPR3757  FIWINSAFYLFIGSFILGYSISSIRIYMNTAIMNTVSDKYVGRSFTIWTSISLLLQSLIA
                  ************************************************************
  
  COL             PFLGRWINEINDKFGFYIILILSLLIFVTLLLVNKTDKIKYAHKEE
  NCTC8325        PFLGRWINEINDKFGFYIILILSLLIFVTLLLVNKTDKIKYAHKEE
  Newman          PFLGRWINEINDKFGFYIILILSLLIFVTLLLVNKTDKIKYAHKEE
  USA300_FPR3757  PFLGRWINEINDKFGFYIILILSLLIFVTLLLVNKTGKIKYAHKEE
                  ************************************.*********