PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000928000
• symbol^?: —
• synonym:
• description^?: MFS transporter
• strand^?: +
• coordinates^?: 1194888..1196134
• synteny block^?: BlockID0004650
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL0110
N315:
SA0121
NCTC8325:
SAOUHSC_00085
Newman:
NWMN_0070
USA300_FPR3757:
SAUSA300_0128
04-02981:
SA2981_0126
08BA02176:
C248_0115
11819-97:
MS7_0117
6850:
RSAU_000080
71193:
ST398NM01_0139
ECT-R 2:
ECTR2_81
ED133:
—
ED98:
SAAV_0093
HO 5096 0412:
SAEMRSA15_00920
JH1:
SaurJH1_0116
JH9:
SaurJH9_0112
JKD6008:
SAA6008_00104
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR0128
MSHR1132:
—
MSSA476:
SAS0100
Mu3:
SAHV_0124
Mu50:
SAV0125
MW2:
MW0099
RF122:
—
ST398:
SAPIG0139
T0131:
—
TCH60:
HMPREF0772_10372
TW20:
SATW20_01370
USA300_TCH1516:
USA300HOU_0137
VC40:
—

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVIS
  N315            MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVIS
  NCTC8325        MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVIS
  Newman          MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVIS
  USA300_FPR3757  MEKNVEKSFIKIGLYFQIAYIVLMAITLCGFVICYGLIFGLFYLLSGSRADYLIVTIVIS
                  ************************************************************
  
  COL             AIISIFVIILSIVPVIVLASDLFKERISKGVILIVLAIIALVLCNFVSAILWFVSAISIL
  N315            AIISIFVIILSIVPVIVLASDLFKERISKGVILIVLAIIALVLCNFVSAILWFVSAISIL
  NCTC8325        AIISIFVIILSIVPVIVLASDLFKERISKGVILIVLAIIALVLCNFVSAILWFVSAISIL
  Newman          AIISIFVIILSIVPVIVLASDLFKERISKGVILIVLAIIALVLCNFVSAILWFVSAISIL
  USA300_FPR3757  AIISIFVIILSIVPVIVLASDLFKERISKGVILIVLAIIALVLCNFVSAILWFVSAISIL
                  ************************************************************
  
  COL             GRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEI
  N315            GRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEI
  NCTC8325        GRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEI
  Newman          GRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEI
  USA300_FPR3757  GRKKLVAAADTTTIQKSKGNANQASHKDTCKKELDSQDMMEHPEVKNPTTKNLEGFNEEI
                  ************************************************************
  
  COL             HKDEATTKVVSDNTEPPIESKDHVSKKD
  N315            HKDEATTKVVSDNTEPPIESKGHVSKKD
  NCTC8325        HKDEATTKVVSDNTEPPIESKDHVSKKD
  Newman          HKDEATTKVVSDNTEPPIESKDHVSKKD
  USA300_FPR3757  HKDEATTKVVSDNTEPPIESKDHVSKKD
                  *********************.******