PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002215000
• symbol^?: —
• synonym:
• description^?: lysine decarboxylase

  descriptions from strain specific annotations:

  • lysine decarboxylase
  • Orn/Lys/Arg decarboxylase
  • aminotransferase class V-fold PLP-dependent enzyme
  • Orn/Lys/Arg decarboxylase, putative
  • Orn/Lys/Arg decarboxylase family protein
  • arginine/lysine/ornithine decarboxylase
  • arginine decarboxylase
  • Arginine decarboxylase / Lysine decarboxylase
  • orn/Lys/Arg decarboxylase, major domain protein
  • Orn/Lys/Arg decarboxylase, major region
  • Orn/Lys/Arg decarboxylase major region
• strand^?: +
• coordinates^?: 2729378..2730715
• synteny block^?: BlockID0015140
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0523
N315:
SA0439
NCTC8325:
SAOUHSC_00450
Newman:
NWMN_0445 (tmk)
USA300_FPR3757:
SAUSA300_0458
04-02981:
SA2981_0456
08BA02176:
C248_0535
11819-97:
MS7_0458
6850:
RSAU_000418
71193:
ST398NM01_0547
ECT-R 2:
ECTR2_421
ED133:
SAOV_0502
ED98:
SAAV_0427
HO 5096 0412:
SAEMRSA15_04070
JH1:
SaurJH1_0515
JH9:
SaurJH9_0502
JKD6008:
SAA6008_00485 (ldcC)
JKD6159:
SAA6159_00432 (ldcC)
LGA251:
SARLGA251_04150
M013:
M013TW_0450
MRSA252:
SAR0482
MSHR1132:
SAMSHR1132_04250
MSSA476:
SAS0438
Mu3:
SAHV_0478
Mu50:
SAV0481
MW2:
MW0436
RF122:
SAB0430
ST398:
SAPIG0547
T0131:
SAT0131_00524 (putA)
TCH60:
HMPREF0772_10040
TW20:
SATW20_05490
USA300_TCH1516:
USA300HOU_0480
VC40:
SAVC_01990

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKQPILNKLESLNQEEAISLHVPGHKNMTIGHLSQLSMTMDKTEIPGLDDLHHPEEVILE
  N315            MKQPILNKLESLNQEEAISLHVPGHKNMTIGHLSQLSMTMDKTEIPGLDDLHHPEEVILE
  NCTC8325        MKQPILNKLESLNQEEAISLHVPGHKNMTIGHLSQLSMTMDKTEIPGLDDLHHPEEVILE
  Newman          MKQPILNKLESLNQEEAISLHVPGHKNMTIGHLSQLSMTMDKTEIPGLDDLHHPEEVILE
  USA300_FPR3757  MKQPILNKLESLNQEEAISLHVPGHKNMTIGHLSQLSMTMDKTEIPGLDDLHHPEEVILE
                  ************************************************************
  
  COL             SMKQVEKHSDYDAYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGH
  N315            SMKQVEKHSDYDAYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGH
  NCTC8325        SMKQVEKHSDYDAYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGH
  Newman          SMKQVEKHSDYDAYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGH
  USA300_FPR3757  SMKQVEKHSDYDAYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGH
                  ************************************************************
  
  COL             FIETHQSPLTNHYNKVNLSRLNNDGHKLAVLTYPNYYGETFNVEEVIKSLHQLNIPVLID
  N315            FIETHQSPLTNHYNKVNLSRLNNDGHKLAVLTYPNYYGETFNVEEVIKSLHQLNIPVLID
  NCTC8325        FIETHQSPLTNHYNKVNLSRLNNDGHKLAVLTYPNYYGETFNVEEVIKSLHQLNIPVLID
  Newman          FIETHQSPLTNHYNKVNLSRLNNDGHKLAVLTYPNYYGETFNVEEVIKSLHQLNIPVLID
  USA300_FPR3757  FIETHQSPLTNHYNKVNLSRLNNDGHKLAVLTYPNYYGETFNVEEVIKFLHQLNIPVLID
                  ************************************************ ***********
  
  COL             EAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRETIIEYLSYF
  N315            EAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRETIIEYLSYF
  NCTC8325        EAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRETIIEYLSYF
  Newman          EAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRETIIEYLSYF
  USA300_FPR3757  EAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRETIIEYLSYF
                  ************************************************************
  
  COL             QTSSPSYLIMASLESAAEFYKTYDSTVFFDKRAQLIECLEKKGFEMLQVDDPLKLLIKYE
  N315            QTSSPSYLIMASLESAAEFYKTYDSTVFFDKRAQLIECLEKKGFEMLQVDDPLKLLIKYE
  NCTC8325        QTSSPSYLIMASLESAAEFYKTYDSTVFFDKRAQLIECLEKKGFEMLQVDDPLKLLIKYE
  Newman          QTSSPSYLIMASLESAAEFYKTYDSTVFFDKRAQLIECLEKKGFEMLQVDDPLKLLIKYE
  USA300_FPR3757  QTSSPSYLIMASLESAAEFYKTYDSTVFFDKRAQLIECLEKKGFEMLQVDDPLKLLIKYE
                  ************************************************************
  
  COL             GFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTYLFDSLLRKIEDMILPKKSVSK
  N315            GFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTYLFDLLLRKIEDMILPKKSVSK
  NCTC8325        GFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTYLFDSLLRKIEDMILPKKSVSK
  Newman          GFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTYLFDSLLRKIEDMILPKKSVSK
  USA300_FPR3757  GFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTYLFDSLLRKIEDMILPKKSVSK
                  ****************************************** *****************
  
  COL             VKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKVLARHIVPYPPGIPIIFKGETITENMIE
  N315            VKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKVLARHIVPYPPGIPIIFKGETITENMIE
  NCTC8325        VKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKVLARHIVPYPPGIPIIFKGETITENMIE
  Newman          VKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKVLARHIVPYPPGIPIIFKGETITENMIE
  USA300_FPR3757  VKQTQLLTTEGNYKPKRFEYVTWCDLKKAKGKVLARHIVPYPPGIPIIFKGETITENMIE
                  ************************************************************
  
  COL             LVNEYLETGMIVEGIKNNKILVEDE
  N315            LVNEYLETGMIVEGIKNNKILVEDE
  NCTC8325        LVNEYLETGMIVEGIKNNKILVEDE
  Newman          LVNEYLETGMIVEGIKNNKILVEDE
  USA300_FPR3757  LVNEYLETGMIVEGIKNNKILVEDE
                  *************************