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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002302000
- symbol?: sigH
- synonym:
- description?: RNA polymerase sigma factor
- RNA polymerase sigma factor
- RNA polymerase sigma factor, putative
- ECF subfamily RNA polymerase sigma-24 factor
- igma-70 family RNA polymerase sigma factor
- putative DNA-binding protein
- putative RNA polymerase, sigma factor
- putative RNA polymerase sigma factor, sigma-70 family
- RNA polymerase factor sigma-70
- RNA polymerase sigma-H factor
- RNA polymerase sporulation specific sigmafactor SigH
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2822374..2822943
- synteny block?: BlockID0016010
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0509
08BA02176:
C248_0607 (sigH)
11819-97:
MS7_0523
6850:
RSAU_000485
71193:
ST398NM01_0609
ECT-R 2:
ECTR2_487
ED133:
SAOV_0569
ED98:
SAAV_0495
HO 5096 0412:
SAEMRSA15_04600 (sigH)
JH1:
SaurJH1_0570
JH9:
SaurJH9_0556
JKD6008:
SAA6008_00540
JKD6159:
SAA6159_00487
LGA251:
SARLGA251_04690 (sigH)
M013:
M013TW_0518
MRSA252:
SAR0537 (sigH)
MSHR1132:
SAMSHR1132_04780
MSSA476:
SAS0491
Mu3:
SAHV_0531
Mu50:
SAV0533
MW2:
MW0489
RF122:
SAB0484
ST398:
SAPIG0609
T0131:
SAT0131_00586 (bsaP)
TCH60:
HMPREF0772_12656 (sigH)
TW20:
SATW20_06030 (sigH)
USA300_TCH1516:
USA300HOU_0527
VC40:
SAVC_02255
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
N315 MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
NCTC8325 MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
Newman MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
USA300_FPR3757 MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMY
****************:*******************************************
COL RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
N315 RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
NCTC8325 RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
Newman RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
USA300_FPR3757 RSVQTFDFSGEQPFTNYVQCLITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDV
************************************************************
COL ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
N315 ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
NCTC8325 ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
Newman ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
USA300_FPR3757 ENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVIYNAIQRCKN
************************************************************
COL KIKRYFKMI
N315 KIKRYFKMI
NCTC8325 KIKRYFKMI
Newman KIKRYFKMI
USA300_FPR3757 KIKRYFKMI
*********