PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003134000
• symbol^?: opp3C
• synonym:
• description^?: ABC transporter permease

  descriptions from strain specific annotations:

  • ABC transporter permease
  • oligopeptide ABC transporter permease
  • oligopeptide transport system permease protein, putative
  • oligopeptide transport system permease OppC
  • binding--dependent transport system inner membrane component family protein
  • binding-protein-dependent transport system inner membrane protein
  • dipeptide transport system permease protein DppC
  • oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein, Opp3C
  • oligopeptide ABC superfamily ATP binding cassette transporter, permease protein
  • oligopeptide ABC transporter membrane protein
  • Oligopeptide transport system permease protein oppC
  • peptide ABC transporter permease
  • putative oligopeptide transport system permease
  • putative oligopeptide transport system permeaseprotein
• strand^?: +
• coordinates^?: 3517475..3518545
• synteny block^?: BlockID0022260
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0992 (oppC)
N315:
SA0846
NCTC8325:
SAOUHSC_00924
Newman:
NWMN_0857 (oppC)
USA300_FPR3757:
SAUSA300_0888 (oppC)
04-02981:
SA2981_0942 (oppC)
08BA02176:
C248_1010 (oppC)
11819-97:
MS7_0942
6850:
RSAU_000861 (oppC1)
71193:
ST398NM01_0983
ECT-R 2:
ECTR2_842
ED133:
SAOV_0933
ED98:
SAAV_0948 (oppC)
HO 5096 0412:
SAEMRSA15_08160 (oppC)
JH1:
SaurJH1_1005
JH9:
SaurJH9_0986
JKD6008:
SAA6008_00940 (oppC)
JKD6159:
SAA6159_00844 (opp3C)
LGA251:
SARLGA251_09030 (oppC)
M013:
M013TW_0909
MRSA252:
SAR0950 (oppC)
MSHR1132:
SAMSHR1132_08350
MSSA476:
SAS0857
Mu3:
SAHV_0982
Mu50:
SAV0987
MW2:
MW0869
RF122:
SAB0853 (oppC)
ST398:
SAPIG0983
T0131:
SAT0131_01020
TCH60:
HMPREF0772_12258 (oppC)
TW20:
SATW20_09850 (oppC)
USA300_TCH1516:
USA300HOU_0945 (oppC1)
VC40:
SAVC_04105

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAENKNNLSINDDHSNAAMTHTSDAIASSDFIIRELDLNQEPEMQRESKNFWQDAWAQLK
  N315            MAENKNNLSINDDHSNAAMTHTSDAIASSDFIIRELDLNQEPEMQRESKNFWQDAWAQLK
  NCTC8325        MAENKNNLSINDDHSNAAMTHTSDAIASSDFIIRELDLNQEPEMQRESKNFWQDAWAQLK
  Newman          MAENKNNLSINDDHSNAAMTHTSDAIASSDFIIRELDLNQEPEMQRESKNFWQDAWAQLK
  USA300_FPR3757  MAENKNNLSINDDHSNAAMTHTSDAIASSDFIIRELDLNQEPEMQRESKNFWQDAWAQLK
                  ************************************************************
  
  COL             RNKLAVVGMIGLIIIVIFAFIGPVINKHDYAEQNVEHRNLPAKIPVLDKVPFLPFDGKDA
  N315            RNKLAVVGMIGLIIIVIFAFIGPVINKHDYAEQNVEHRNLPAKIPVLDKVPFLPFDGKDA
  NCTC8325        RNKLAVVGMIGLIIIVIFAFIGPVINKHDYAEQNVEHRNLPAKIPVLDKVPFLPFDGKDA
  Newman          RNKLAVVGMIGLIIIVIFAFIGPVINKHDYAEQNVEHRNLPAKIPVLDKVPFLPFDGKDA
  USA300_FPR3757  RNKLAVVGMIGLIIIVIFAFIGPVINKHDYAEQNVEHRNLPAKIPVLDKVPFLPFDGKDA
                  ************************************************************
  
  COL             DGKDAYKAANAKENYWFGTDQLGRDLWTRTWKGAQISLFIGVVAAMLDIFIGVVYGAISG
  N315            DGKDAYKAANAKENYWFGTDQLGRDLWTRTWKGAQISLFIGVVAAMLDIFIGVVYGAISG
  NCTC8325        DGKDAYKAANAKENYWFGTDQLGRDLWTRTWKGAQISLFIGVVAAMLDIFIGVVYGAISG
  Newman          DGKDAYKAANAKENYWFGTDQLGRDLWTRTWKGAQISLFIGVVAAMLDIFIGVVYGAISG
  USA300_FPR3757  DGKDAYKAANAKENYWFGTDQLGRDLWTRTWKGAQISLFIGVVAAMLDIFIGVVYGAISG
                  ************************************************************
  
  COL             FFGGRVDTIMQRILEVIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEF
  N315            FFGGRVDTIMQRILEVIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEF
  NCTC8325        FFGGRVDTIMQRILEVIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEF
  Newman          FFGGRVDTIMQRILEVIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEF
  USA300_FPR3757  FFGGRVDTIMQRILEVIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEF
                  ************************************************************
  
  COL             LKLKNQEFVMASKTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGV
  N315            LKLKNQEFVMASKTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGV
  NCTC8325        LKLKNQEFVMASKTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGV
  Newman          LKLKNQEFVMASKTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGV
  USA300_FPR3757  LKLKNQEFVMASKTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGV
                  ************************************************************
  
  COL             PAPQTSLGSLVNDGRAMLLIYPHELFIPAMILSLLILFFYLFSDGLRDAFDPKMRK
  N315            PAPQTSLGSLVNDGRAMLLIYPHELFIPAMILSLLILFFYLFSDGLRDAFDPKMRK
  NCTC8325        PAPQTSLGSLVNDGRAMLLIYPHELFIPAMILSLLILFFYLFSDGLRDAFDPKMRK
  Newman          PAPQTSLGSLVNDGRAMLLIYPHELFIPAMILSLLILFFYLFSDGLRDAFDPKMRK
  USA300_FPR3757  PAPQTSLGSLVNDGRAMLLIYPHELFIPAMILSLLILFFYLFSDGLRDAFDPKMRK
                  ********************************************************