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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003146000
- symbol?: opp4A
- synonym:
- description?: ABC transporter substrate-binding protein
- ABC transporter substrate-binding protein
- oligopeptide ABC transporter oligopeptide-binding protein
- oligopeptide ABC transporter substrate-binding protein
- oligopeptide ABC transporter, oligopeptide-binding protein
- bacterial extracellular solute-binding s, 5 Middle family protein
- extracellular solute-binding protein
- extracellular solute-binding proteins, family 5 Middle family protein
- Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA
- peptide ABC transporter oligopeptide-binding protein
- pseudogene
- transport system extracellular bindinglipoprotein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3527687..3534337
- synteny block?: BlockID0022350
- occurrence?: in 58% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0946 (oppA)
08BA02176:
—
11819-97:
MS7_0947
6850:
—
71193:
—
ECT-R 2:
ECTR2_846
ED133:
—
ED98:
SAAV_0952
HO 5096 0412:
—
JH1:
SaurJH1_1009
JH9:
SaurJH9_0990
JKD6008:
SAA6008_00944
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR0954
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0986
Mu50:
SAV0991
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_01024
TCH60:
—
TW20:
SATW20_09890
USA300_TCH1516:
USA300HOU_0949 (oppA2)
VC40:
SAVC_04125
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MGKLIKYISILLIVVLVLSACGKSSNKDEGVKDATKTETSKHKGGTLNVALTAPPSGVYS
N315 MGKLIKYISILLIVVLVLSACGKSSNKDEGVKDATKTETSKHKGGTLNVALTAPPSGVYS
NCTC8325 MGKLIKYISILLIVVLVLSACGKSSNKDEGVKDATKTETSKHKGGTLNVALTAPPSGVYS
Newman MGKLIKYISILLIVVLVLSACGKSSNKDEGVKDATKTETSKHKGGTLNVALTAPPSGVYS
USA300_FPR3757 MGKLIKYISILLIVVLVLSACGKSSNKDEGVKDATKTETSKHKGGTLNVALTAPPSGVYS
************************************************************
COL SLLNSTHADSVVEGYFNESLLATDKKIRPKAYIASWKDIEPAKKIEFKIKKGIKWHDGNE
N315 SLLNSTHADSVVEGYFNESLLATDKKIRPKAYIASWKDIEPAKKIEFKIKKGIKWHDGNE
NCTC8325 SLLNSTHADSVVEGYFNESLLATDKKIRPKAYIASWKDIEPAKKIEFKIKKGIKWHDGNE
Newman SLLNSTHADSVVEGYFNESLLATDKKIRPKAYIASWKDIEPAKKIEFKIKKGIKWHDGNE
USA300_FPR3757 SLLNSTHADSVVEGYFNESLLATDKKIRPKAYIASWKDIEPAKKIEFKIKKGIKWHDGNE
************************************************************
COL LKIDDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKTDHISGLKKIDDYTMQVTFDK
N315 LKIDDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKTDHISGLKKIDDYTMQVTFDK
NCTC8325 LKIDDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKTDHISGLKKIDDYTMQVTFDK
Newman LKIDDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKTDHISGLKKIDDYTMQVTFDK
USA300_FPR3757 LKIDDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKTDHISGLKKIDDYTMQVTFDK
************************************************************
COL KQENYLTGFITGPLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYKVKKIVPGEAVQLVKF
N315 KQENYLTGFITGHLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYKVKKIVPGEAVQLVKF
NCTC8325 KQENYLTGFITGPLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYKVKKIVPGEAVQLVKF
Newman KQENYLTGFITGPLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYKVKKIVPGEAVQLVKF
USA300_FPR3757 KQENYLTGFITGPLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYKVKKIVPGEAVQLVKF
************ ***********************************************
COL DDYWQGKPALDKINLKVIDQAQIIKAMEKGDIDVANDATGAMAKDAKSSNAGLKVLSAPS
N315 DDYWQGKPALDKINLKVIDQAQIIKAMEKGDIDVANDATGAMAKDAKSSNAGLKVLSAPS
NCTC8325 DDYWQGKPALDKINLKVIDQAQIIKAMEKGDIDVANDATGAMAKDAKSSNAGLKVLSAPS
Newman DDYWQGKPALDKINLKVIDQAQIIKAMEKGDIDVANDATGAMAKDAKSSNAGLKVLSAPS
USA300_FPR3757 DDYWQGKPALDKINLKVIDQAQIIKAMEKGDIDVANDATGAMAKDAKSSNAGLKVLSAPS
************************************************************
COL LDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAIDREKWIKAFFNGYASEINSF
N315 LDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAIDREKWIKAFFNGYASEINSF
NCTC8325 LDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAIDREKWIKAFFNGYASEINSF
Newman LDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAIDREKWIKAFFNGYASEINSF
USA300_FPR3757 LDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAIDREKWIKAFFNGYASEINSF
************************************************************
COL VPSMHWIAANPKDLNDYKYDPEKAKKILDKLGYKDRDGDGFREDPKGNKFEINFKHYSGS
N315 VPSMHWIAANPKDLNDYKYDPEKAKKILDKLGYKDRDGDGFREDPKGNKFEINFKHYSGS
NCTC8325 VPSMHWIAANPKDLNDYKYDPEKAKKILDKLGYKDRDGDGFREDPKGNKFEINFKHNSGS
Newman VPSMHWIAANPKDLNDYKYDPEKAKKILDKLGYKDRDGDGFREDPKGNKFEINFKHYSGS
USA300_FPR3757 VPSMHWIAANPKDLNDYKYDPEKAKKILDKLGYKDRDGDGFREDPKGNKFEINFKHYSGS
******************************************************** ***
COL NPTFEPRTAAIKDFWEKVGLKTNVKLVEFGKYNEDLANASKDMEVYFRSWAGGTDPDPSD
N315 NPTFEPRTAAIKDFWEKVGLKTNVKLVEFGKYNEDLANASKDMEVYFRSWAGGTDPDPSD
NCTC8325 NPTFEPRTAAIKDFWEKVGLKTNVKLVEFGKYNEDLANASKDMEVYFRSWAGGTDPDPSD
Newman NPTFEPRTAAIKDFWEKVGLKTNVKLVEFGKYNEDLANASKDMEVYFRSWAGGTDPDPSD
USA300_FPR3757 NPTFEPRTAAIKDFWEKVGLKTNVKLVEFGKYNEDLANASKDMEVYFRSWAGGTDPDPSD
************************************************************
COL LYHTDRPQNEMRTVLPKSDQYLDDALDFEKVGIDEKKRKDIYVKWQKYMNDELPGLPMFQ
N315 LYHTDRPQNEMRTVLPKSDQYLDDALDFEKVGIDEKKRKDIYVKWQKYMNDELPGLPMFQ
NCTC8325 LYHTDRPQNEMRTVLPKSDQYLDDALDFEKVGIDEKKRKDIYVKWQKYMNDELPGLPMFQ
Newman LYHTDRPQNEMRTVLPKSDQYLDDALDFEKVGIDEKKRKDIYVKWQKYMNDELPGLPMFQ
USA300_FPR3757 LYHTDRPQNEMRTVLPKSDQYLDDALDFEKVGIDEKKRKDIYVKWQKYMNDELPGLPMFQ
************************************************************
COL GKSITIVNDKVRNLDIEIGTDQSLYNLTKEA
N315 GKSITIVNDKVRNLDIEIGTDQSLYNLTKEA
NCTC8325 GKSITIVNDKVRNLDIEIGTDQSLYNLTKEA
Newman GKSITIVNDKVRNLDIEIGTDQSLYNLTKEA
USA300_FPR3757 GKSITIVNDKVRNLDIEIGTDQSLYNLTKEA
*******************************