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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003477000
- symbol?: —
- synonym:
- description?: RluA family pseudouridine synthase
- RluA family pseudouridine synthase
- pseudouridine synthase, RluA family
- pseudouridylate synthase
- ribosomal large subunit pseudouridine synthase D
- Pseudouridine synthase
- pseudouridylate synthase RluD
- putative RNA pseudouridylate synthase
- ribosomal large subunit psudouridine synthase D
- RluD subfamily ribosomal large subunit pseudouridine synthase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3816163..3817080
- synteny block?: BlockID0025560
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1155
08BA02176:
C248_1226
11819-97:
MS7_1154
6850:
RSAU_001080
71193:
ST398NM01_1194
ECT-R 2:
ECTR2_1052
ED133:
SAOV_1200
ED98:
SAAV_1168
HO 5096 0412:
SAEMRSA15_10300
JH1:
SaurJH1_1281
JH9:
SaurJH9_1256
JKD6008:
SAA6008_01151 (rluD)
JKD6159:
SAA6159_01050 (rluD)
LGA251:
SARLGA251_11080
M013:
M013TW_1132
MRSA252:
SAR1173
MSHR1132:
SAMSHR1132_10380
MSSA476:
SAS1131
Mu3:
SAHV_1187
Mu50:
SAV1197
MW2:
MW1080
RF122:
SAB1061
ST398:
SAPIG1194 (rluD)
T0131:
SAT0131_01244
TCH60:
HMPREF0772_12035 (rluD)
TW20:
SATW20_11910
USA300_TCH1516:
USA300HOU_1134 (rluD)
VC40:
SAVC_05150
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL METYEFNITDKEQTGMRVDKLLPELNNDWSRNQIQDWIKAGLVVANDKVVKSNYKVKLND
N315 METYEFNITDKEQTGMRVDKLLPELNNDWSRNQIQDWIKAGLVVANDKVVKSNYKVKLND
NCTC8325 METYEFNITDKEQTGMRVDKLLPELNNDWSRNQIQDWIKAGLVVANDKVVKSNYKVKLND
Newman METYEFNITDKEQTGMRVDKLLPELNNDWSRNQIQDWIKAGLVVANDKVVKSNYKVKLND
USA300_FPR3757 METYEFNITDKEQTGMRVDKLLPELNNDWSRNQIQDWIKAGLVVANDKVVKSNYKVKLND
************************************************************
COL HIVVTEKEVVEADILPENLNLDIYYEDDDVAVVYKPKGMVVHPSPGHYTNTLVNGLMYQI
N315 HIVVTEKEVVEADILPENLNLDIYYEDDDVAVVYKPKGMVVHPSPGHYTNTLVNGLMYQI
NCTC8325 HIVVTEKEVVEADILPENLNLDIYYEDDDVAVVYKPKGMVVHPSPGHYTNTLVNGLMYQI
Newman HIVVTEKEVVEADILPENLNLDIYYEDDDVAVVYKPKGMVVHPSPGHYTNTLVNGLMYQI
USA300_FPR3757 HIVVTEKEVVEADILPENLNLDIYYEDDDVAVVYKPKGMVVHPSPGHYTNTLVNGLMYQI
************************************************************
COL KNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDIAHRGLVEQLMDKSVKRKYIALVHGNIP
N315 KNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDIAHRGLVEQLMDKSVKRKYIALVHGNIP
NCTC8325 KNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDIAHRGLVEQLMDKSVKRKYIALVHGNIP
Newman KNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDIAHRGLVEQLMDKSVKRKYIALVHGNIP
USA300_FPR3757 KNLSGINGEIRPGIVHRIDMDTSGLLMVAKNDIAHRGLVEQLMDKSVKRKYIALVHGNIP
************************************************************
COL HDYGTIDAPIGRNKNDRQSMAVVDDGKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVH
N315 HDYGTIDAPIGRNKNDRQSMAVVDDGKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVH
NCTC8325 HDYGTIDAPIGRNKNDRQSMAVVDDGKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVH
Newman HDYGTIDAPIGRNKNDRQSMAVVDDGKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVH
USA300_FPR3757 HDYGTIDAPIGRNKNDRQSMAVVDDGKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVH
************************************************************
COL MKYIGFPLVGDPKYGPKKTLDIGGQALHAGLIGFEHPVTGEYIERHAELPQDFEDLLDTI
N315 MKYIGFPLVGDPKYGPKKTLDIGGQALHAGLIGFEHPVTGEYIERHAELPQDFEDLLDTI
NCTC8325 MKYIGFPLVGDPKYGPKKTLDIGGQALHAGLIGFEHPVTGEYIERHAELPQDFEDLLDTI
Newman MKYIGFPLVGDPKYGPKKTLDIGGQALHAGLIGFEHPVTGEYIERHAELPQDFEDLLDTI
USA300_FPR3757 MKYIGFPLVGDPKYGPKKTLDIGGQALHAGLIGFEHPVTSEYIERHAELPQDFEDLLDTI
***************************************.********************
COL RKRDA
N315 RKRDA
NCTC8325 RKRDA
Newman RKRDA
USA300_FPR3757 RKRDA
*****