PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004277000
• symbol^?: tag
• synonym:
• description^?: DNA-3-methyladenine glycosylase I

  descriptions from strain specific annotations:

  • DNA-3-methyladenine glycosylase I
  • DNA-3-methyladenine glycosidase
  • DNA-3-methyladenine glycosylase
  • DNA-3-methyladenine glycosylase 1
• strand^?: +
• coordinates^?: 4524050..4524650
• synteny block^?: BlockID0033010
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1711
N315:
SA1489 (tag)
NCTC8325:
SAOUHSC_01768
Newman:
NWMN_1559
USA300_FPR3757:
SAUSA300_1612 (tag)
04-02981:
SA2981_1623 (tag)
08BA02176:
C248_1706 (tag)
11819-97:
MS7_1672 (tag)
6850:
RSAU_001524
71193:
ST398NM01_1719
ECT-R 2:
ECTR2_1505
ED133:
SAOV_1653 (tag)
ED98:
SAAV_1651
HO 5096 0412:
SAEMRSA15_15750 (tag)
JH1:
SaurJH1_1756
JH9:
SaurJH9_1722
JKD6008:
SAA6008_01632 (tag)
JKD6159:
SAA6159_01590 (tag)
LGA251:
SARLGA251_15580 (tag)
M013:
M013TW_1678
MRSA252:
SAR1744 (tag)
MSHR1132:
SAMSHR1132_14930
MSSA476:
SAS1593
Mu3:
SAHV_1651 (tag)
Mu50:
SAV1664 (tag)
MW2:
MW1608 (tag)
RF122:
SAB1525 (tag)
ST398:
SAPIG1719 (tag)
T0131:
SAT0131_01765 (opp1D)
TCH60:
HMPREF0772_11485 (tag)
TW20:
SATW20_16560 (tag)
USA300_TCH1516:
USA300HOU_1656 (tag)
VC40:
SAVC_07535

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEASEEAF
  N315            MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
  NCTC8325        MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
  Newman          MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
  USA300_FPR3757  MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
                  **************:**************************************** ****
  
  COL             YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
  N315            YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
  NCTC8325        YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
  Newman          YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
  USA300_FPR3757  YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
                  ************************************************************
  
  COL             NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
  N315            NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCP
  NCTC8325        NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
  Newman          NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
  USA300_FPR3757  NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
                  ********************************************************:***
  
  COL             SKPKHN
  N315            SKPKHN
  NCTC8325        SKPKHN
  Newman          SKPKHN
  USA300_FPR3757  SKPKHN
                  ******