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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005012000
- symbol?: hlb-2
- synonym:
- description?: sphingomyelin phosphodiesterase
- sphingomyelin phosphodiesterase
- truncated beta-hemolysin
- phosphodiesterase
- phospholipase C
- beta-hemolysin
- pseudogene
- truncated beta-hemplysin
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5191148..5358414
- synteny block?: BlockID0038930
- occurrence?: in 88% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1965 (hlb)
08BA02176:
C248_2026
11819-97:
MS7_2035 (sph)
6850:
RSAU_001834 (hlb)
71193:
ST398NM01_2059
ECT-R 2:
ECTR2_1875 (sph)
ED133:
SAOV_2040
ED98:
SAAV_2071 (hlb)
HO 5096 0412:
SAEMRSA15_18540b (hlb)
JH1:
SaurJH1_2098
JH9:
SaurJH9_2061
JKD6008:
SAA6008_02057
JKD6159:
SAA6159_01938
LGA251:
SARLGA251_18220 (hlb)
M013:
M013TW_1975
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_1989
Mu50:
SAV2003 (truncated-hlb)
MW2:
MW1940 (hlb)
RF122:
SAB1874
ST398:
SAPIG2059 (sph)
T0131:
SAT0131_02139
TCH60:
HMPREF0772_11179 (sph)
TW20:
—
USA300_TCH1516:
USA300HOU_2010 (hlb2)
VC40:
SAVC_08960
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVLYPN
N315 M---------------------------------------RDSKPNKYCCYKVS--MYPN
NCTC8325 --------------------------------------------------------MYPN
Newman --------------------------------------------------------MYPN
USA300_FPR3757 --------------------------------------------------------MYPN
:***
COL WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
N315 WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
NCTC8325 WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
Newman WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
USA300_FPR3757 WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
************************************************************
COL TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
N315 TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
NCTC8325 TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
Newman TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
USA300_FPR3757 TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
************************************************************
COL GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
N315 GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
NCTC8325 GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
Newman GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
USA300_FPR3757 GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
************************************************************
COL LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
N315 LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
NCTC8325 LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
Newman LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
USA300_FPR3757 LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
************************************************************
COL KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
N315 KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
NCTC8325 KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
Newman KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
USA300_FPR3757 KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
******************************