PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005587000
• symbol^?: lacF
• synonym:
• description^?: lactose-specific phosphotransferase enzyme IIA component

  descriptions from strain specific annotations:

  • lactose-specific phosphotransferase enzyme IIA component
  • PTS system, lactose-specific IIA component
  • PTS system lactose-specific transporter subunit IIA
  • PTS lactose/cellobiose transporter subunit IIA
  • lactose-specific phosphotransferase enzyme iia component (pts system lactose-specific eiia component) (eiia-lac) (eiii-lac)
  • PTS system lactose/cellobiose-specific IIA component
  • PTS system lactose transporter subunit IIA
• strand^?: -
• coordinates^?: 5728950..5729264
• synteny block^?: BlockID0043470
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2182 (lacF)
N315:
SA1993 (lacF)
NCTC8325:
SAOUHSC_02451
Newman:
NWMN_2095 (lacF)
USA300_FPR3757:
SAUSA300_2151 (lacF)
04-02981:
SA2981_2129 (lacF)
08BA02176:
C248_2229 (lacF)
11819-97:
MS7_2214 (lacF)
6850:
RSAU_002035 (lacF)
71193:
ST398NM01_2251
ECT-R 2:
ECTR2_2052 (lacF)
ED133:
SAOV_2238c
ED98:
SAAV_2252 (lacF)
HO 5096 0412:
SAEMRSA15_20960 (lacF)
JH1:
SaurJH1_2261
JH9:
SaurJH9_2222
JKD6008:
SAA6008_02232
JKD6159:
SAA6159_02102
LGA251:
SARLGA251_19860 (lacF)
M013:
M013TW_2157
MRSA252:
SAR2282 (lacF)
MSHR1132:
SAMSHR1132_20230
MSSA476:
SAS2092
Mu3:
SAHV_2175 (lacF)
Mu50:
SAV2191 (lacF)
MW2:
MW2117 (lacF)
RF122:
SAB2072c (lacF)
ST398:
SAPIG2251
T0131:
SAT0131_02365
TCH60:
HMPREF0772_11000 (lacF)
TW20:
SATW20_23290 (lacF)
USA300_TCH1516:
USA300HOU_2184 (lacF)
VC40:
SAVC_09845 (lacF)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNREEVQLLGFEIVAFAGDARSKFLEALTAAQAGDFAKADALIEEGNNCIAEAHRAQTSL
  N315            MNREEVQLLGFEIVAFAGDARSKFLEALTAAQAGDFAKADALIEEGNNCIAEAHRAQTSL
  NCTC8325        MNREEVQLLGFEIVAFAGDARSKFLEALTAAQAGDFAKADALIEEGNNCIAEAHRAQTSL
  Newman          MNREEVQLLGFEIVAFAGDARSKFLEALTAAQAGDFAKADALIEEGNNCIAEAHRAQTSL
  USA300_FPR3757  MNREEVQLLGFEIVAFAGDARSKFLEALTAAQAGDFAKADALIEEGNNCIAEAHRAQTSL
                  ************************************************************
  
  COL             LAKEAQGDDIAYSVTMMHGQDHLMTTILLKDLMKHLLEFYKRG
  N315            LAKEAQGDDIAYSVTMMHGQDHLMTTILLKDLMKHLLEFYKRG
  NCTC8325        LAKEAQGDDIAYSVTMMHGQDHLMTTILLKDLMKHLLEFYKRG
  Newman          LAKEAQGDDIAYSVTMMHGQDHLMTTILLKDLMKHLLEFYKRG
  USA300_FPR3757  LAKEAQGDDIAYSVTMMHGQDHLMTTILLKDLMKHLLEFYKRG
                  *******************************************