Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005948000
- symbol?: tcyA
- synonym:
- description?: amino acid ABC transporter substrate-binding protein
- amino acid ABC transporter substrate-binding protein
- amino acid ABC transporter amino acid-binding protein
- amino acid ABC transporter, amino acid-binding protein, putative
- transporter substrate-binding domain-containing protein
- L-cystine-binding protein tcyA
- amino acid ABC superfamily ATP binding cassette transporter, binding protein
- amino acid ABC transporter ATP-binding protein
- Cysteine ABC transporter, substrate-binding protein
- cysteine ABC transporter substrate-binding protein
- extracellular amino acid binding ABC transporter
- extracellular solute-binding lipoprotein
- extracellular solute-binding protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6011672..6012451
- synteny block?: BlockID0046920
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2351
08BA02176:
C248_2459
11819-97:
MS7_2429 (tcyA)
6850:
RSAU_002252
71193:
ST398NM01_2465
ECT-R 2:
ECTR2_2273
ED133:
SAOV_2460c
ED98:
SAAV_2479
HO 5096 0412:
SAEMRSA15_23130
JH1:
SaurJH1_2487
JH9:
SaurJH9_2439
JKD6008:
SAA6008_02455
JKD6159:
SAA6159_02315
LGA251:
SARLGA251_21960
M013:
M013TW_2375
MRSA252:
SAR2504
MSHR1132:
SAMSHR1132_22420
MSSA476:
SAS2305
Mu3:
SAHV_2398
Mu50:
SAV2414
MW2:
MW2336
RF122:
SAB2294c
ST398:
SAPIG2465
T0131:
SAT0131_02605 (def2)
TCH60:
HMPREF0772_10773 (tcyA)
TW20:
SATW20_25440
USA300_TCH1516:
USA300HOU_2395
VC40:
SAVC_10940
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKRLLFVMIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDI
N315 MKRLLFVMIAFVFILAACGNNSSKDKEANKDSKTINVGTEGTYAPFSFHDKDGKLTGYDI
NCTC8325 MKRLLFVMIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDI
Newman MKRLLFVMIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDI
USA300_FPR3757 MKRLLFVMIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDI
****************************.*******************************
COL DVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSS
N315 DVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSS
NCTC8325 DVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSS
Newman DVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSS
USA300_FPR3757 DVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSS
************************************************************
COL AVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRV
N315 AVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRV
NCTC8325 AVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRV
Newman AVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRV
USA300_FPR3757 AVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRV
************************************************************
COL DGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEEN
N315 DGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEEN
NCTC8325 DGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEEN
Newman DGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEEN
USA300_FPR3757 DGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEEN
************************************************************
COL GELAKIGKKWFGQDVSKSK
N315 GELAKIGKKWFGQDVSKSK
NCTC8325 GELAKIGKKWFGQDVSKSK
Newman GELAKIGKKWFGQDVSKSK
USA300_FPR3757 GELAKIGKKWFGQDVSKSK
*******************