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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005999000
- symbol?: opuCB
- synonym:
- description?: choline ABC transporter permease
- choline ABC transporter permease
- amino acid ABC transporter permease
- ABC transporter permease
- glycine betaine/carnitine/choline ABC transporter
- glycine betaine/carnitine/choline ABC transporter, permease protein, putative
- glycine betaine/carnitine/choline ABC transporter opuCB
- OsmotiCALL import_20_25_26_pangenomey activated L-carnitine/choline ABC transporter, permease protein OpuCB
- putative glycine betaine/carnitine/cholinetransport system permease protein
- betaine-carnitine-choline ABC transporter
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane protein
- glycine betaine/carnitine/choline ABC transporter permease
- glycine betaine/carnitine/choline transport system permease OpuCB
- glycine betaine/carnitine/choline transport system permease protein opuCB
- glycine betaine/choline ABC superfamily ATP binding cassette transporter, membrane protein
- glycine betaine/choline ABC transporter membrane protein
- glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, membrane protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6060925..6061560
- synteny block?: BlockID0047430
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2384 (opuCB)
08BA02176:
C248_2497 (opuCB)
11819-97:
MS7_2461
6850:
RSAU_002287 (opuCB)
71193:
ST398NM01_2499
ECT-R 2:
ECTR2_2305
ED133:
SAOV_2497c
ED98:
SAAV_2513
HO 5096 0412:
SAEMRSA15_23470 (opuCB)
JH1:
SaurJH1_2522
JH9:
SaurJH9_2474
JKD6008:
SAA6008_02489 (opuCB)
JKD6159:
SAA6159_02345 (opuCB)
LGA251:
SARLGA251_22280 (opuCB)
M013:
M013TW_2410
MRSA252:
SAR2537 (opuCB)
MSHR1132:
SAMSHR1132_22750
MSSA476:
SAS2339
Mu3:
SAHV_2431 (opuCB)
Mu50:
SAV2447 (opuCB)
MW2:
MW2371 (opuCB)
RF122:
SAB2329c (opuCB)
ST398:
SAPIG2499
T0131:
SAT0131_02646
TCH60:
HMPREF0772_10741 (opuCB)
TW20:
SATW20_25760 (opuCB)
USA300_TCH1516:
USA300HOU_2436
VC40:
SAVC_11110
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKTKRTANIVLTVAGVLQT
N315 MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKTKRTANIVLTVAGVLQT
NCTC8325 MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKTKRTANIVLTVAGVLQT
Newman MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKTKRTANIVLTVAGVLQT
USA300_FPR3757 MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKTKRTANIVLTVAGVLQT
************************************************************
COL IPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDSNIKEAGKSMGMTQF
N315 IPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDSNIKEAGKSMGMTQF
NCTC8325 IPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDSNIKEAGKSMGMTQF
Newman IPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDSNIKEAGKSMGMTQF
USA300_FPR3757 IPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDSNIKEAGKSMGMTQF
************************************************************
COL QLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGGLGDFIFNGLNLYDPLMIVTA
N315 QLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGGLGDFIFNGLNLYDPLMIVTA
NCTC8325 QLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGGLGDFIFNGLNLYDPLMIVTA
Newman QLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGGLGDFIFNGLNLYDPLMIVTA
USA300_FPR3757 QLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGGLGDFIFNGLNLYDPLMIVTA
************************************************************
COL TVLVTALALGVDALLALVEKWVVPKGLKVSG
N315 TVLVTALALGVDALLALVEKWVVPKGLKVSG
NCTC8325 TVLVTALALGVDALLALVEKWVVPKGLKVSG
Newman TVLVTALALGVDALLALVEKWVVPKGLKVSG
USA300_FPR3757 TVLVTALALGVDALLALVEKWVVPKGLKVSG
*******************************