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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13080 [old locus tag: SA2280 ]
  • pan locus tag?: SAUPAN006092000
  • symbol: SA_RS13080
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13080 [old locus tag: SA2280 ]
  • symbol: SA_RS13080
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2557087..2557353
  • length: 267
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2557087..2557353) NCBI
  • BioCyc: G1G21-2656 BioCyc
  • MicrobesOnline: see SA2280

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAAAGGCTCTAAACAAATACTTTTGATTATGGGCATTATATCTCTTATTGTTTTATTT
    ATTTTTACACTATTCATCATGGCACAATATGCAAAACATTATGAACAAAAATCCGACAGT
    TCCAACGCACATACTTTAAACTCATCATCAGCCATAATTGAGCAACATACTATGTCGAAT
    TTAGCGTCTCTAGATTTATACGCTCCTGTTCGTAACATTACTTCTAGTCGTGATATTCAT
    CCCATTTATTTCATGACAAAAGATTAA
    60
    120
    180
    240
    267

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS13080 [old locus tag: SA2280 ]
  • symbol: SA_RS13080
  • description: hypothetical protein
  • length: 88
  • theoretical pI: 8.94062
  • theoretical MW: 9964.55
  • GRAVY: 0.176136

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA2280
  • PFAM:
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 17.2)
    no clan defined SelK_SelG; Selenoprotein SelK_SelG (PF10961; HMM-score: 15.8)
    and 2 more
    Sigma_reg_N; Sigma factor regulator N-terminal (PF13800; HMM-score: 13.5)
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.170297
    • TAT(Tat/SPI): 0.002748
    • LIPO(Sec/SPII): 0.027568
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAHTLNSSSAIIEQHTMSNLASLDLYAPVRNITSSRDIHPIYFMTKD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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