NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS05875 [old locus tag: NWMN_1038 ]
- pan locus tag?: SAUPAN001705000
- symbol: NWMN_RS05875
- pan gene symbol?: —
- synonym:
- product: phage holin
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS05875 [old locus tag: NWMN_1038 ]
- symbol: NWMN_RS05875
- product: phage holin
- replicon: chromosome
- strand: +
- coordinates: 1139484..1139921
- length: 438
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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361
421ATGGATATTAACTGGAAATTGAGATTTAAAAATAAAGCAGTATTAACAGGTTTAGTTGGT
GCATTGTTGTTATTTATCAAACAAATCACAGATTTATTCGGATTCGATTTATCAACTCAA
TTAAATCAAGCCAGCGCGATTATAGGTGCTATCCTCACGCTACTTACAGGGATTGGCGTT
ATTACTGACCCAACGTCAAAAGGTGTTGCTGATTCATCAATAGCACAGACATATCAAGCG
CCTAGAGATAGTAGCAAAGAAGAACAACAAGTCACTTGGAAAACTTCACAAGATACTAGC
TTAACACCGGAATTAAGTACAAAAGCACCGAAAGAGTACGATACATCACAACCATTTACA
GACACCTCTAATGAAATCGGTTTTGACGTGAACGAGTATCATCACGGAGGTGGCGACAAT
GCAAGCAAAATTGACTAA60
120
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438
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS05875 [old locus tag: NWMN_1038 ]
- symbol: NWMN_RS05875
- description: phage holin
- length: 145
- theoretical pI: 4.52831
- theoretical MW: 15753.5
- GRAVY: -0.310345
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions holin, phage phi LC3 family (TIGR01598; HMM-score: 116.2)
- TheSEED:
- ⊞PFAM: no clan defined Phage_holin_1; Bacteriophage holin (PF04531; HMM-score: 93)and 2 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDINWKLRFKNKAVLTGLVGALLLFIKQITDLFGFDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVADSSIAQTYQAPRDSSKEEQQVTWKTSQDTSLTPELSTKAPKEYDTSQPFTDTSNEIGFDVNEYHHGGGDNASKID
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available