Jump to navigation
Jump to search
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1038 [new locus tag: NWMN_RS05875 ]
- pan locus tag?: SAUPAN001705000
- symbol: NWMN_1038
- pan gene symbol?: —
- synonym:
- product: phage holin
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1038 [new locus tag: NWMN_RS05875 ]
- symbol: NWMN_1038
- product: phage holin
- replicon: chromosome
- strand: +
- coordinates: 1139484..1139921
- length: 438
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 5330642 NCBI
- RefSeq: YP_001332072 NCBI
- BioCyc:
- MicrobesOnline: 3706589 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGGATATTAACTGGAAATTGAGATTTAAAAATAAAGCAGTATTAACAGGTTTAGTTGGT
GCATTGTTGTTATTTATCAAACAAATCACAGATTTATTCGGATTCGATTTATCAACTCAA
TTAAATCAAGCCAGCGCGATTATAGGTGCTATCCTCACGCTACTTACAGGGATTGGCGTT
ATTACTGACCCAACGTCAAAAGGTGTTGCTGATTCATCAATAGCACAGACATATCAAGCG
CCTAGAGATAGTAGCAAAGAAGAACAACAAGTCACTTGGAAAACTTCACAAGATACTAGC
TTAACACCGGAATTAAGTACAAAAGCACCGAAAGAGTACGATACATCACAACCATTTACA
GACACCTCTAATGAAATCGGTTTTGACGTGAACGAGTATCATCACGGAGGTGGCGACAAT
GCAAGCAAAATTGACTAA60
120
180
240
300
360
420
438
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1038 [new locus tag: NWMN_RS05875 ]
- symbol: NWMN_1038
- description: phage holin
- length: 145
- theoretical pI: 4.52831
- theoretical MW: 15753.5
- GRAVY: -0.310345
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions holin, phage phi LC3 family (TIGR01598; HMM-score: 116.2)
- TheSEED:
- PFAM: no clan defined Phage_holin_1; Bacteriophage holin (PF04531; HMM-score: 93)and 2 moreRP1-2; Tubuliform egg casing silk strands structural domain (PF12042; HMM-score: 15.3)DUF4727; Domain of unknown function (DUF4727) (PF15856; HMM-score: 12.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0
- Signal peptide possibility: 0
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.055484
- TAT(Tat/SPI): 0.000593
- LIPO(Sec/SPII): 0.004262
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDINWKLRFKNKAVLTGLVGALLLFIKQITDLFGFDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVADSSIAQTYQAPRDSSKEEQQVTWKTSQDTSLTPELSTKAPKEYDTSQPFTDTSNEIGFDVNEYHHGGGDNASKID
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.