NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS13240 [old locus tag: SAUSA300_2392 ]
- pan locus tag?: SAUPAN005999000
- symbol: SAUSA300_RS13240
- pan gene symbol?: opuCB
- synonym:
- product: choline ABC transporter permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS13240 [old locus tag: SAUSA300_2392 ]
- symbol: SAUSA300_RS13240
- product: choline ABC transporter permease
- replicon: chromosome
- strand: -
- coordinates: 2575271..2575906
- length: 636
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (2575271..2575906) NCBI
- BioCyc: SAUSA300_RS13240 BioCyc
- MicrobesOnline: see SAUSA300_2392
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGATTGAGTTCCTACATGAACATGGTGGACAGTTGATGTCGAAAACACTGGAACATTTC
TATATTTCTATAGTGGCATTATTACTTGCCATCATTGTTGCAGTACCTATAGGCATTTTA
TTATCAAAAACAAAGCGAACTGCCAATATTGTATTAACTGTGGCAGGTGTCTTACAAACT
ATTCCAACACTAGCTGTACTTGCTATTATGATACCGATTTTTGGTGTTGGTAAAACGCCT
GCAATTGTAGCGCTATTTATTTATGTATTATTACCTATTTTAAATAACACGGTACTCGGT
GTTCAAAATATTGATAGCAACATTAAAGAAGCTGGAAAAAGTATGGGAATGACACAATTT
CAATTGATGAAGGATGTTGAATTGCCGTTAGCATTGCCGCTTATCATTGGTGGCATTCGT
TTGTCATCTGTGTATGTAATTAGTTGGGCTACACTTGCAAGTTATGTAGGTGCGGGTGGA
TTAGGTGATTTCATTTTCAATGGTTTAAATTTATATGATCCACTGATGATTGTAACTGCA
ACGGTACTCGTTACTGCACTAGCATTAGGTGTTGATGCCTTATTAGCTTTAGTTGAAAAA
TGGGTAGTTCCCAAAGGCTTAAAAGTATCTGGATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS13240 [old locus tag: SAUSA300_2392 ]
- symbol: SAUSA300_RS13240
- description: choline ABC transporter permease
- length: 211
- theoretical pI: 8.84699
- theoretical MW: 22385.9
- GRAVY: 1.03744
⊟Function[edit | edit source]
- ⊞reaction: EC 3.6.3.32? ExPASy
- ⊞TIGRFAM: choline ABC transporter, permease protein (TIGR03416; HMM-score: 95.1)and 8 more
- TheSEED: see SAUSA300_2392
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 79.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI: 446491266 NCBI
- RefSeq: WP_000569120 NCBI
- UniProt: see SAUSA300_2392
⊟Protein sequence[edit | edit source]
- MIEFLHEHGGQLMSKTLEHFYISIVALLLAIIVAVPIGILLSKTKRTANIVLTVAGVLQTIPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDSNIKEAGKSMGMTQFQLMKDVELPLALPLIIGGIRLSSVYVISWATLASYVGAGGLGDFIFNGLNLYDPLMIVTATVLVTALALGVDALLALVEKWVVPKGLKVSG
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CodY see SAUSA300_2392
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available