PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS07820 [old locus tag: SAUSA300_1433 ]
- pan locus tag?: SAUPAN001313000
- symbol: SAUSA300_RS07820
- pan gene symbol?: —
- synonym:
- product: transcriptional regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS07820 [old locus tag: SAUSA300_1433 ]
- symbol: SAUSA300_RS07820
- product: transcriptional regulator
- replicon: chromosome
- strand: -
- coordinates: 1587729..1587920
- length: 192
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1587729..1587920) NCBI
- BioCyc: SAUSA300_RS07820 BioCyc
- MicrobesOnline: see SAUSA300_1433
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGCCGGAACAATTATCCGTAAGAAAATGGAGACTTGTAAGGGACTTGAAACAGCAAGAA
GTAGCAGATATATTGGGCGTCAATGCAAAGACAGTTGGTCATTGGGAAAAGGATGACACT
AATTTAAGTAATGTTACAGTTTACGCTTTAGCAAAGTTATATGATATTGAGGTAGACCAG
ATAAAGGTCTAA60
120
180
192
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS07820 [old locus tag: SAUSA300_1433 ]
- symbol: SAUSA300_RS07820
- description: transcriptional regulator
- length: 63
- theoretical pI: 5.78693
- theoretical MW: 7281.3
- GRAVY: -0.366667
⊟Function[edit | edit source]
- ⊞TIGRFAM: putative zinc finger/helix-turn-helix protein, YgiT family (TIGR03830; HMM-score: 24)Regulatory functions DNA interactions transcriptional regulator, y4mF family (TIGR03070; HMM-score: 22.3)and 1 more
- TheSEED: see SAUSA300_1433
- ⊞PFAM: HTH (CL0123) HTH_3; Helix-turn-helix (PF01381; HMM-score: 37.4)and 13 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI: 447037804 NCBI
- RefSeq: WP_001115060 NCBI
- UniProt: see SAUSA300_1433
⊟Protein sequence[edit | edit source]
- MPEQLSVRKWRLVRDLKQQEVADILGVNAKTVGHWEKDDTNLSNVTVYALAKLYDIEVDQIKV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available