⊟Summary[edit | edit source]

PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA1472 [new locus tag: SA_RS08290 ]
pan locus tag^?: SAUPAN004252000
symbol: SA1472
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA1472 [new locus tag: SA_RS08290 ]
• symbol: SA1472
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1680354..1680674
• length: 321
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1124316 NCBI
• RefSeq: NP_374759 NCBI
• BioCyc: see SA_RS08290
• MicrobesOnline: 103785 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  
  ATGATTACTGTTGATATTACAGTTAATGATGAAGGCAAAGTAACAGACGTTATTATGGAT
  GGCCATGCTGACCATGGTGAATATGGTCATGATATCGTTTGTGCTGGAGCTTCAGCTGTA
  TTGTTTGGTAGTGTTAATGCGATTATAGGATTGACATCTGAGAGACCAGATATCAATTAT
  GACGACAATGGTGGTCATTTTCATATAAGAAGCGTTGATACAAATAACGATGAAGCGCAA
  CTAATTCTTCAAACAATGCTTGTGTCTTTACAAACTATTGAAGAAGAATATAATGAGAAT
  ATTAGATTAAATTATAAGTGA
  60
  120
  180
  240
  300
  321
  

⊟Protein

• 4PEO
  PDB

⊟General

• locus tag: SA1472 [new locus tag: SA_RS08290 ]
• symbol: SA1472
• description: hypothetical protein
• length: 106
• theoretical pI: 4.05297
• theoretical MW: 11691.8
• GRAVY: -0.250943

⊟Function

• TIGRFAM:
• TheSEED  :
  • Uncharacterized protein YsxB
  CBSS-176279.3.peg.868  FIG139598: Potential ribosomal protein
• PFAM:
  no clan defined Peptidase_Prp; Cysteine protease Prp (PF04327; HMM-score: 86.9)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞⊞PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• ⊞⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9845
  • Cytoplasmic Membrane Score: 0.0078
  • Cell wall & surface Score: 0.0003
  • Extracellular Score: 0.0074
• ⊞⊞LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: No CleavageSite
• ⊞⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.015261
  • TAT(Tat/SPI): 0.000866
  • LIPO(Sec/SPII): 0.001304
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927226 NCBI
• RefSeq: NP_374759 NCBI
• UniProt: A0A0H3JL93 UniProt

⊟Protein sequence

• MITVDITVNDEGKVTDVIMDGHADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINYDDNGGHFHIRSVDTNNDEAQLILQTMLVSLQTIEEEYNENIRLNYK

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: rpmA < SA1472 < rplU

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications