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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0644 [new locus tag: SACOL_RS03325 ]
- pan locus tag?: SAUPAN002446000
- symbol: SACOL0644
- pan gene symbol?: tsaI1
- synonym: tsaI
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0644 [new locus tag: SACOL_RS03325 ]
- symbol: SACOL0644
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 675514..676140
- length: 627
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3238516 NCBI
- RefSeq: YP_185529 NCBI
- BioCyc: see SACOL_RS03325
- MicrobesOnline: 912124 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601TTGCTTTTTAATATTAAGGTTATTAATAAAAATCCGAGATATAAAGTCGTTCAATATAAT
GATGAGTATTTGTTAATTGATTTAGTAAGCACTTGGCTTGTATACTTTTTTCCTTTTATT
AATTGGTTCATTCCCAAAAGGTATGCAAAACTTAGTGAGAAGGAACTTGAAAATTTAAAT
GTTGATAAACAAAATAAAAATAATATTTTCTGGCCAGTTACTGGTAGTTCGTTTTTATTT
GTAGTTATTTTACGGAAATATGTACATACGTTTGAAGTTCAATTAGATAATAAGATTTTA
ATATCTTTATGTTTTATAGGATTTATAGGTATTGCAGCATTTTACATTTACTTAAATAAA
AAGCTTAAACTAAAGATATATGATGATAATCTAGATAATGAAAATAGGGTTATATTAGTG
CCTACTTTTAAAGATGGAAGTTTTATAGTTTTCACATATCTATTATTAGGAGGTTGTTCT
ATATTATTTTTAATATGGCTAATGACTATAAAACCTCAAAATCTACTGGTATTTATTATG
TGGATTATTATTACAATTTTTTTCTTTCTAATAAGCATGGGCTCAATTAGTAATAAAAAG
GTTTATGCCAAACTTAAAAAGCAATAG60
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627
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0644 [new locus tag: SACOL_RS03325 ]
- symbol: SACOL0644
- description: hypothetical protein
- length: 208
- theoretical pI: 10.0279
- theoretical MW: 24689.4
- GRAVY: 0.448077
⊟Function[edit | edit source]
- TIGRFAM: tandem five-TM protein (TIGR01218; HMM-score: 185.2)
- TheSEED :
- repetative hypothetical protein , fig|282458.1.peg.574 homolog
- ⊞PFAM: no clan defined DUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 189.5)and 3 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLFNIKVINKNPRYKVVQYNDEYLLIDLVSTWLVYFFPFINWFIPKRYAKLSEKELENLNVDKQNKNNIFWPVTGSSFLFVVILRKYVHTFEVQLDNKILISLCFIGFIGIAAFYIYLNKKLKLKIYDDNLDNENRVILVPTFKDGSFIVFTYLLLGGCSILFLIWLMTIKPQNLLVFIMWIIITIFFFLISMGSISNKKVYAKLKKQ
⊟Experimental data[edit | edit source]
- experimentally validated: PeptideAtlas
- protein localization: Integral membrane [1] [2]
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
PLoS One: 2009, 4(12);e8176
[PubMed:19997597] [WorldCat.org] [DOI] (I e) - ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p)