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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1152 [new locus tag: NWMN_RS06500 ]
  • pan locus tag?: SAUPAN003534000
  • symbol: NWMN_1152
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1152 [new locus tag: NWMN_RS06500 ]
  • symbol: NWMN_1152
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1262092..1264698
  • length: 2607
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    GTGTTAAAAAAGTGGCTAAATTCAAACGTCAAACAATTCTTTGTTATAACTTTCATTAGT
    GTAATATTAACGCTTATTTTATTTTCTACTCATATCTATGATTATATTGTGAATGGTACT
    GTTTTTAGCGGGGCTGGAGATGGATTCCGTCAAATGATGCCATTTCAAATGTATTTGTAT
    GAACATCTACGTAGTTTTTCTAGTTTATATGATGCATCGTTTGGATTAGGTGGCGATTAT
    ATGAAAGGACTATCATATTATTATTCGCTGTCACCTTTAATGTGGCTAAATTTTCTATTC
    ATTAAAATAGGAGAAACGGTTGGTATATTTAATCCGACGACAATACATTTTTGGCCGACA
    AACCAACTTATTATGGCTATGATACGAGCTATCATAACATTTGTCGTGACCTTCTACTTA
    TTTAAAATATTACACTTTAAACGCTCAGCAAATATGATCGCTACGATTTTATACGGCATG
    TCAACTGTCGTTATATACTTTAATTTTACTTGGTCATTTTATGGAAATTTATTATATTTA
    TTGCCATTATCGATTCTTGGTTTGGAAAGATATTTTCAACAACGCAAAATCGGTATTTTC
    ATTGTTGCGATAGCCTTAACACTATTTAGCAATTTTTATTTCAGTTATTATCAAGCTATT
    ATTATAGGTTGCTACTATTTATATCGACTCATTTTCACTTACAAATATGACATTGTCTCT
    AGAACACAAAAATTAATTTGCGTCATATCTGCTACAGTTTTGAGTGTGTTATCAAGTGTA
    TTTGGTTTATTCACTGGCATTTCTGCGTTTTTGGAAAATGACAGAAAGCAAAATCCCAAT
    GTTGATATACCGTTTTTGACACCACTTGATTATCATTATTTTTTCTTTAGCGATGGATTT
    TATATTACGATTTCAATTCTTACTATCGTTGCATTATTGTCATTCAAACTGTATCGTTTT
    TACTTTTATAGACTTTTCGCAATAGTAACATGGATATTATTTATAGGTTCATTATCACAG
    TATTTCGACAGTGCTTTTAATGGTTTTTCATTTCCAGAAAGGCGTTGGGTGTATATCTTA
    GCACTATCATCAAGTGCTCTTTGCGGATTGTTTATTCAACATTTATCAACATTAAATATG
    AAATATTATTTAATCAGAACAATACCCGTATGCATCATCGCAATACTTTATGTATTACTA
    TCACCGACACACCCACTTGCACTTATAGTAGGTATTATCCTGCTAATAGTGCTTGCCGTT
    ATTTTAAAATTTAGTTTATGGCGTTATAAAAAATTAACCGTTGCAATATTAGTATTAATC
    GTTATGATTCAACAAATCGTCATTTTAGATAACAACAAAAACATGGCAATCAAACCTTAT
    CAACAATCATTATCAACGTTGAAACAACATGATTACCATAGTAACTATGTAAACCAGCTT
    ATAAAAAAGATAAATCAAAATGCAACAGGCTCATTTAATCGCATTGATTATATGTCAGAC
    TATGCATTAAATTCACCATTTATATATCATTATAATGGCATTTCATTATATTCTAGTATT
    TTTAATGGAGACATTTTAAAATATTATGACAAGACACTCCAAATTAATATGCCAATCGAT
    AAAAACAGCACTTATAGATTACTTGGCAATCGTCAAAATTTACTATCACTTTGGAATGTT
    AATGATCGAATTAGAGTGAATCATGATGACAACTTACCATATGGATTTAAAATTAAGTCT
    GAACACAAAGACAATAAAGTTCGTTGGATTCATTCTAAAAATACCATCCATTATCCAAGT
    GCACATATTACAAATAAGGTCTTTTCCAATAAAGAATTAAAATCTCCATTAGATAAAGAA
    CAAGCAATGTTGCAAGGGATTGTTTCTAACAATATTAAAGATGTTAATACACATTTTAAA
    GCCAATAAAAATTTACTATCAGATTCAACAATTAAATTAAATAGTGCAGCCTGGCAATCT
    CCTACAAAACATTTATTACAAGTTAAACAAAATAATGGTGGTCTAACTGTACAGTTGCCA
    AAATCAGTTTCTAATCAATTTAAAGATTTGTATTTTGAAATGGATTTAGAATTACTTTCG
    CCGGATAAAGCTCATGATGTTAAAGTGAATGAATATACACAAGAAAGAAATAAACTCACT
    TATAAATATCGACGCGTTGTAACACCCGTAACGATACGCATTAAAGCTCCAGATAGAATT
    AGATTATCATTGCCTAAAGGTAAGTATCGAGTAAATTTAAAAGGGATATACGGCGAAGAT
    TATACCACGCTTAAAGACGCTTCAAATTCATTAGAAGCTGTCAAAGTTAGTAAGACAAAG
    CATGGTTATACTATTACTAAAAATAAAAATTCATCTGGGTATATTGTTTTGCCAACAGCA
    TATAATCAAGGTATGAAAGCGACATCAGGTGATCAAAGTCTTAAAGTTGAACAAGTAAAT
    GGTGTTATGACCGGCATTAAAGCACCTAAAAATATAACAAAGATTCAATTGAGCTATACC
    CCACCATACTATTATTTACTTATAACAATTACTATATTTGGCATTATATGTAGTATTATT
    TTCACGAGATGGGCAAGACAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2607

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1152 [new locus tag: NWMN_RS06500 ]
  • symbol: NWMN_1152
  • description: hypothetical protein
  • length: 868
  • theoretical pI: 10.0434
  • theoretical MW: 100430
  • GRAVY: 0.138364

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesSporulation and germinationstage III sporulation protein AF (TIGR02896; HMM-score: 15.7)
  • TheSEED:  
    FIG01108412: hypothetical protein 
  • PFAM:
    GT-C (CL0111) YfhO; Bacterial membrane protein YfhO (PF09586; HMM-score: 535.5)
    no clan definedDUF4179; Domain of unknown function (DUF4179) (PF13786; HMM-score: 7.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.163
    • Ymax_pos: 12
    • Cmax: 0.137
    • Cmax_pos: 46
    • Smax: 0.322
    • Smax_pos: 7
    • Smean: 0.261
    • D: 0.201
  • predicted transmembrane helices (TMHMM): 12

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLYEHLRSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPTNQLIMAMIRAIITFVVTFYLFKILHFKRSANMIATILYGMSTVVIYFNFTWSFYGNLLYLLPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVSRTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGFYITISILTIVALLSFKLYRFYFYRLFAIVTWILFIGSLSQYFDSAFNGFSFPERRWVYILALSSSALCGLFIQHLSTLNMKYYLIRTIPVCIIAILYVLLSPTHPLALIVGIILLIVLAVILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQLIKKINQNATGSFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPIDKNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPSAHITNKVFSNKELKSPLDKEQAMLQGIVSNNIKDVNTHFKANKNLLSDSTIKLNSAAWQSPTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLTYKYRRVVTPVTIRIKAPDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTKHGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYTPPYYYLLITITIFGIICSIIFTRWARQK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_1152 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]