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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1780 [new locus tag: NWMN_RS10175 ]
  • pan locus tag?:
  • symbol: NWMN_1780
  • pan gene symbol?:
  • synonym:
  • product: phage tape measure protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1780 [new locus tag: NWMN_RS10175 ]
  • symbol: NWMN_1780
  • product: phage tape measure protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1993831..1997298
  • length: 3468
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    GTGACGGAATATAAAATTAAAGCGACTATTGAAGCAAGTGTAGCTAAATTCAAAAAGCAA
    ATTGATAGTGCGGTTAAATCTGTACAAAAATTCAAAAGAGTAGCAGATCAAACTAAAGAT
    GTTGAATTAAACGCTAACGATAAAAAATTACAAAAAACTATCAAGGTTGCTAAAAAGTCT
    TTAGATGCCTTTAGCAACAAAAATGTAAAAGCTAAATTAGATGCTAGTATACAAGACTTA
    CAACAAAAGATATTAGAATCAAATTTTGAACTAGACAAACTTAACTCCAAAGAAGCTAGC
    CCAGAAGTTAAACTACAAAAACAAAAGTTAACTAAAGATATCGCTGAAGCAGAAGCTAAG
    TTATCCGAACTGGAAAAGAAACGTGTCAATATTGACGTCAATGCAGATAACAGTAAATTC
    AATCGAGTGTTAAAAGTATCTAAAGCTAGTCTTGAAGCATTAAATAGGTCTAAAGCTAAA
    GCTTTTATAGACGTGGACAATGGTGTTGCTAACTCTAAAATAAAACGCACTAAAGAAGAG
    CTTAAAAGTATTCCAAACAAAACTAGATCTCGACTAGAGGTAGATACAGGACTTTCTATC
    CCAACTATTTATGCGTTCAAAAAATCATTAGACGCATTACCGAACAAAAAAACAACAAAG
    GTAGATGTAGATACTAATGGTTTAAAGAAAGCTTATGCCTACATAATAAAAGCAAACGAC
    AATTTCCAAAGACAGATGGGGAATTTAGCTAATATGTTCCGTGTGTTCGGTACTGTAGGT
    TCTAATATGGTTGGTGGATTACTAACTTCATCTTTTAGCATTTTAATACCTATAATAGCG
    AGCGTAGTACCTGTAGTGTTTGCACTATTAAACGCTATCAAAGTGTTAACTGGTGGTGTA
    CTTGCTTTAGGTGGTGCGGTAGCAATAGCCGGCGCTGGCTTTGTAGCATTTGGCGCAATG
    GCTATCAGCGCTATAAAGATGCTTAATGATGGCACTTTACAAGCTAGCTCAGCAACAAAC
    GAATACAAAAAAGCTTTAGATGGCGTAAAGTCAGCATGGACTGATATTATAAAGCAAAAT
    CAATCCGCTATCTTCACAACTCTTGCAAATGGTTTAAATACTGTTAAAACAGCAATGCAA
    AGCTTGCAACCGTTTTTTAGTGGTATTTCAAGAGGAATGGAAGAGGCGTCTCAAAGTGTA
    CTTAAATGGGCTCAAAATAGCGGTGTAGCATCAAGGTTCTTCAACATGATGAATACAACT
    GGTGTTTCGGTATTTAACAAGCTATTAAGTGCTGCAGGCGGTTTCGGTGACGGATTAGTC
    AATGTATTCACACAATTAGCGCCACTGTTTCAATGGTCGGCTGATTGGTTGGATAGATTA
    GGTCAATCTTTCTCTAACTGGGCTAATAGTGCAGCTGGAGAAAATTCGATAACTCGTTTT
    ATTGAATACACAAAAACAAACTTACCTATCATTGGTAATATTTTCAAAAATGTTTTCGTT
    GGAATTAACAATTTGATGAATGCATTCAGCGGATCATCAACTGGAATCTTCCAGTCTCTT
    GAACAGATGACTGCTAAATTCAGAGAATGGTCTGAACAAGTTGGACAATCACAAGGGTTT
    AAAGATTTTGTCAGCTATATACAAACTAATGGACCACTAATAATGCAATTGATTGGAAAC
    ATCGCAAGAGGATTAGTTGCATTCGCAACAGCAATGGCTCCTATAGCTAGTGCAGTATTA
    CGCGTTGCAGTAGCAATAACTGGTTGGATAGCTAACTTGTTTGAGGCGCATCCGGCTACA
    GCACAATTAGTTGGTGTCATTATAACTTTAGTTGGTGCATTTAGATTTTTAATACCGATT
    ATTCTTGCTGTATCTAACTTTATGGGTGGCGGATTAATAGGTAGAATCATTGCATTAGTA
    AGTAAGTTCGGTTTATTAAGAGCGGGATTAACAATTTTAAAAGGTGCGTTCATGTTATTA
    AAAGGACCATTAAAAATTATATCAGTTATATTCCAATTGTTATTCGGTAAGATTGGATTA
    ATTAGAAATGCTATCACAGGACTAGTAACTGTGTTTGGTATTTTAGGTGGTCCAATAACA
    ATAGTTATTGGTGTAATCGCTGCATTAATAGCTATATTCGTTTTATTGTGGAATAAAAAT
    GAAGGATTCAGAAACTTTATTATAAATGCTTGGAATGCGATAAAAACGTTTATGGTTACA
    GTTTGGAATGTGTTGAAAACTGTAGCTTCGGTTGTATGGAATGCTATTTTAAAAGCTATC
    ACTACAGCAGTAACTAATGTATACAATTTTATAATGATTGTTTGGAATCAAATAGTCGCT
    TATTTACAAGGGTTATGGAATGGAATTATCGCTATTGCAACAACGGTGTGGAACCTTTTA
    GTTACAATCATCACAACTGTTTTCACGACGATAATGACAATAGTTATGACGATATGGACA
    GCTATTTGGACATTCTTAAGTACAATCTGGAACACGATAATTACAATCGCTACTACGATT
    TGGAATTTGTTAGTCACTGTAATAACTACAGTGTTTACCACAATTATGACTATCGCAATG
    ACAATTTGGAACGCTATTTGGACGTTCTTACAAACGTTGTGGAACACTATAGTTACTGTG
    GCAACTAAGGTTTGGAACGCTATCACTACAGCTATATCTACTGCGTTACAAGCGGCATGG
    AGTTTTATTTCTAATATATGGAATACGATTTGGAGTTTCTTATCTGGTATATTAACGACA
    ATTTGGAATAAAGTTGTAAGCATATTCACACAAGTTGTATCAACTATATCAGACAAAATG
    TCTCAAGCTTGGAACTTCATCGTGACTAAAGGTATGCAATGGGTATCTACTATAACAAGT
    ACGCTAATTAACTTTGTTAATAGAGTTATTCAAGGATTCGTTAATGTTGTAAACAAAGTT
    AGTCAAGGTATGACAAATGCAGTAAATAAAATAAAAAGTTTTATAGGAGATTTTGTGTCT
    GCAGGTGCTGATATGATCCGTGGTTTAATTAGAGGTATTGGACAAATGGCTGGTCAATTA
    GTAGATGCAGCTAAAAATGTTGCTAAGAAAGCTTTAGATGCAGCTAAAAGTGCTTTGGGT
    ATTCACTCACCTTCACGTGAATTCATGGATGTTGGTATGTATTCAATGCTAGGTTTCGTT
    AAAGGTATAGATAATCATTCAAGTAAAGTTATCCGTAATGTTTCTAATGTTGCAGATAAA
    GTAGTTGATGCATTTCAACCTACATTAAACGCACCTGACATTTCTAGTATTACAGGAAAC
    TTAAGTAATTTAGGTGGAAATATAAATGCGCAAGTACAACACACACATTCTATTGAAACA
    TCACCGAACATGAAAACTGTTAAAGTTGAATTCGATGTCAATAACGATGCGCTTACTAGT
    ATTGTTAACGGCAGAAATGCTAAACGCAATTCTGAGTATTACTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
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    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3468

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1780 [new locus tag: NWMN_RS10175 ]
  • symbol: NWMN_1780
  • description: phage tape measure protein
  • length: 1155
  • theoretical pI: 10.6692
  • theoretical MW: 125746
  • GRAVY: 0.325455

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Phages, Prophages, Transposable elements, PlasmidsPhages, ProphagesPhage tail proteins 2 Phage tail length tape-measure protein 
  • PFAM:
    no clan definedRibosomal_L31e; Ribosomal protein L31e (PF01198; HMM-score: 14.2)
    HTH (CL0123) DUF2316; Uncharacterized protein conserved in bacteria (DUF2316) (PF10078; HMM-score: 9.1)
    no clan definedKfrA_N; Plasmid replication region DNA-binding N-term (PF11740; HMM-score: 8.1)
    Syntaxin-6_N; Syntaxin 6, N-terminal (PF09177; HMM-score: 7.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 14
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.153
    • Ymax_pos: 36
    • Cmax: 0.108
    • Cmax_pos: 24
    • Smax: 0.302
    • Smax_pos: 30
    • Smean: 0.191
    • D: 0.168
  • predicted transmembrane helices (TMHMM): 13

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTEYKIKATIEASVAKFKKQIDSAVKSVQKFKRVADQTKDVELNANDKKLQKTIKVAKKSLDAFSNKNVKAKLDASIQDLQQKILESNFELDKLNSKEASPEVKLQKQKLTKDIAEAEAKLSELEKKRVNIDVNADNSKFNRVLKVSKASLEALNRSKAKAFIDVDNGVANSKIKRTKEELKSIPNKTRSRLEVDTGLSIPTIYAFKKSLDALPNKKTTKVDVDTNGLKKAYAYIIKANDNFQRQMGNLANMFRVFGTVGSNMVGGLLTSSFSILIPIIASVVPVVFALLNAIKVLTGGVLALGGAVAIAGAGFVAFGAMAISAIKMLNDGTLQASSATNEYKKALDGVKSAWTDIIKQNQSAIFTTLANGLNTVKTAMQSLQPFFSGISRGMEEASQSVLKWAQNSGVASRFFNMMNTTGVSVFNKLLSAAGGFGDGLVNVFTQLAPLFQWSADWLDRLGQSFSNWANSAAGENSITRFIEYTKTNLPIIGNIFKNVFVGINNLMNAFSGSSTGIFQSLEQMTAKFREWSEQVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIANLFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLRAGLTILKGAFMLLKGPLKIISVIFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVIAALIAIFVLLWNKNEGFRNFIINAWNAIKTFMVTVWNVLKTVASVVWNAILKAITTAVTNVYNFIMIVWNQIVAYLQGLWNGIIAIATTVWNLLVTIITTVFTTIMTIVMTIWTAIWTFLSTIWNTIITIATTIWNLLVTVITTVFTTIMTIAMTIWNAIWTFLQTLWNTIVTVATKVWNAITTAISTALQAAWSFISNIWNTIWSFLSGILTTIWNKVVSIFTQVVSTISDKMSQAWNFIVTKGMQWVSTITSTLINFVNRVIQGFVNVVNKVSQGMTNAVNKIKSFIGDFVSAGADMIRGLIRGIGQMAGQLVDAAKNVAKKALDAAKSALGIHSPSREFMDVGMYSMLGFVKGIDNHSSKVIRNVSNVADKVVDAFQPTLNAPDISSITGNLSNLGGNINAQVQHTHSIETSPNMKTVKVEFDVNNDALTSIVNGRNAKRNSEYYL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]