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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01325 [old locus tag: NWMN_0239 ]
  • pan locus tag?: SAUPAN001214000
  • symbol: NWMN_RS01325
  • pan gene symbol?:
  • synonym:
  • product: TIGR01741 family protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS01325 [old locus tag: NWMN_0239 ]
  • symbol: NWMN_RS01325
  • product: TIGR01741 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 296039..296539
  • length: 501
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (296039..296539) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
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    361
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    481
    ATGACTTTCGAAGAGAAACTAAGTCAAATGTACAATAAAATTGCAAGTGAGATCAGTGGA
    ATGATACCAGTAGAATGGGAGCAAGTATTTACAATAGCTTATGTAACTGATCAAGCTGGG
    GAAGTCATTTTTAATTATACTAAACCAGGTAGTGATGAATTAAATTATTATTCAGACATA
    CCTAAAGATTGCAATGTCTCAAAAGATATTTTTAAGAATTCATGGTTTAAAGTTTATCGA
    ATGTTTGATGAGTTAAGAGAAACTTTTAAAGAAGAAGAGCTTGAACCATGGACATCATGC
    GAATTTGACTTTACAAGAGATGGCAAATTGAATGTATCTTTTGATTATATTGATTGGGTG
    AATTCAGAATTTGGACCAATGGGAAGAGAACATTATTATATGTATAAAAAATTTGGAATT
    TGGCCTGAAAAAGAATATGCCATAAATTGGGTTGAAAAAATAAAAGATTATGTTAAAGAG
    CAAGATGAAGCTGAACTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    501

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS01325 [old locus tag: NWMN_0239 ]
  • symbol: NWMN_RS01325
  • description: TIGR01741 family protein
  • length: 166
  • theoretical pI: 4.19689
  • theoretical MW: 20015.3
  • GRAVY: -0.68494

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    conserved hypothetical protein (TIGR01741; HMM-score: 255.1)
  • TheSEED:
  • PFAM:
    no clan definedDUF600; Protein of unknown function, DUF600 (PF04634; HMM-score: 163.4)
    Holin-II (CL0563) Phage_holin_2_2; Phage holin T7 family, holin superfamily II (PF10746; HMM-score: 13.8)
    no clan definedDUF1031; Protein of unknown function (DUF1031) (PF06275; HMM-score: 13.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.115
    • Ymax_pos: 11
    • Cmax: 0.117
    • Cmax_pos: 27
    • Smax: 0.168
    • Smax_pos: 6
    • Smean: 0.137
    • D: 0.123
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446064290 NCBI
  • RefSeq: WP_000142145 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTFEEKLSQMYNKIASEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTKPGSDELNYYSDIPKDCNVSKDIFKNSWFKVYRMFDELRETFKEEELEPWTSCEFDFTRDGKLNVSFDYIDWVNSEFGPMGREHYYMYKKFGIWPEKEYAINWVEKIKDYVKEQDEAEL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS01325 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]