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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01655 [old locus tag: NWMN_0289 ]
  • pan locus tag?:
  • symbol: NWMN_RS01655
  • pan gene symbol?:
  • synonym:
  • product: terminase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS01655 [old locus tag: NWMN_0289 ]
  • symbol: NWMN_RS01655
  • product: terminase
  • replicon: chromosome
  • strand: +
  • coordinates: 338570..339793
  • length: 1224
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (338570..339793) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAATAAACTTAAATCTTTATATACGGACAAACAAATTGAAATATTGAAGCAAACGCAA
    AAACAAGATTGGTTTATGTTAATTAATCACGGAGCAAAGCGTACAGGTAAAACAATATTA
    AACAATGACTTATTTTTACGTGAGTTAATGCGTGTGCGAAAGATAGCAGACGAAGAAGGA
    ATTGAGACACCTCAATATATACTTGCTGGTGCAACATTAGGTACGATTCAAAAAAACGTA
    CTAATAGAGTTAACTAACAAATATGGCATTGAGTTTAATTTTGATAAATATAATTCATTC
    ATGTTATTTGGCGTTCAAGTGGTTCAGACAGGTCACAGTAAAGTAAGTGGTATAGGAGCT
    ATACGTGGTATGACATCGTTTGGTGCATATATCAATGAAGCGTCGTTAGCGCATGAAGAG
    GTGTTTGACGAGATTAAGTCACGTTGTAGTGGAACTGGTGCAAGAATATTGGTAGATACC
    AACCCTGACCATCCCGAGCATTGGTTGTTGAAAGATTATATTGAAAATACAGATCCTAAA
    GCAGGTATACTGAGTCACCAATTTAAGCTCGATGACAATAACTTTCTTAATGATAGATAT
    AAAGAGTCTATTAAGGCTTCAACACCATCAGGTATGTTCTATGAACGTAATATCAACGGT
    ATGTGGGTGTCTGGTGACGGTGTAGTATATGCCGACTTTGATTTGAATGAGAATACGATT
    AAAGCAGATGAACTGGACGACATACCTATCAAAGAATACTTTGCTGGTGTCGACTGGGGT
    TACGAGCACTATGGATCTATTGTGTTAATAGGACGAGGTATAGATGGTAACTTTTATTTT
    ATTGAGGAGCACGCACACCAATTTAAGTTTATTGATGATTGGGTGGTTATTGCAAAAGAT
    ATTGTAAGTAGATATGGCAATATTAATTTTTACTGCGATACTGCACGACCTGAATACATC
    ACTGAATTTAGAAGACATAGATTACGTGCAATTAACGCTGATAAAAGTAAACTATCGGGT
    GTAGAGGAAGTTGCTAAGTTGTTCAAACAAAACAAGTTACTTGTTCTTTATGATAATATG
    GATAGGTTTAAGCAAGAGGTATTTAAATATGTTTGGCACCCTACAAACGGAGAGCCTATA
    AAAGAATTTGATGACGTGTTGGACTCGTTAAGATATGCCATATACACACATACTAAACCT
    GAACGATTAAGGAGGGGGAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1224

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS01655 [old locus tag: NWMN_0289 ]
  • symbol: NWMN_RS01655
  • description: terminase
  • length: 407
  • theoretical pI: 6.38713
  • theoretical MW: 47126.1
  • GRAVY: -0.479607

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage terminase, large subunit, PBSX family (TIGR01547; HMM-score: 150)
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) Terminase_6; Terminase-like family (PF03237; HMM-score: 33.1)
    Terminase_3; Phage terminase large subunit (PF04466; HMM-score: 31.4)
    RNase_H (CL0219) Terminase_6C; Terminase RNaseH-like domain (PF17289; HMM-score: 17.8)
    no clan definedZoocinA_TRD; Target recognition domain of lytic exoenzyme (PF16775; HMM-score: 15.8)
    Actin_ATPase (CL0108) Actin_micro; Putative actin-like family (PF17003; HMM-score: 12.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.113
    • Ymax_pos: 11
    • Cmax: 0.106
    • Cmax_pos: 22
    • Smax: 0.17
    • Smax_pos: 1
    • Smean: 0.116
    • D: 0.114
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446960322 NCBI
  • RefSeq: WP_001037578 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS01655 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]