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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01660 [old locus tag: NWMN_0290 ]
  • pan locus tag?:
  • symbol: NWMN_RS01660
  • pan gene symbol?: —
  • synonym:
  • product: phage portal protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS01660 [old locus tag: NWMN_0290 ]
  • symbol: NWMN_RS01660
  • product: phage portal protein
  • replicon: chromosome
  • strand: +
  • coordinates: 339790..341214
  • length: 1425
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (339790..341214) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0290

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGACATTGTATAAGTTAATAGATGATATTGAAGCACAAGGAATATTGCCTAAGCATATT
    GAGGCTCTAATAGAGTCACATAAAGACGATAGAGAGAGAATGGTTAATCTCTATAATAGA
    TACAAGACACATATTGACTATGTACCAATATTCAAACGTCGACCAATTGAAGAAAAAGAA
    GATTTTGAAACTGGTGGAAATGTAAGGCGATTAGACGTGTCTGTTAATAACAAACTTAAC
    AACTCTTTTGACAGCGAAATTGTTGATACACGTGTTGGTTATTTACATGGTGTTCCTGTT
    ACTTATGATTTAGATGAAAACGCAGAAAAAAACGAAAAGTTGAAAAAGTTTATAACCAAC
    TTTGCCATTAGAAATAGTGTTGATGATGAGGATTCTGAAATAGGTAAAATGGCAGCAATT
    TGCGGATATGGTGCTAGGTTAGCATATATTGATACGAATGGTGATGTTAGGATTAAGAAT
    ATAGATCCCTATAATGTTATTTTTGTTGGCGACAATATTTTAGAACCTACATACTCATTG
    CGCTACTTTTATGAAAAAGATGATGATAATGGCACTGATTATGTGTACGCAGAGTTTTAC
    GATAATACTTATTATTATGTATTTCGAGGAGAAGGTATTGACGCTTTGCAAGAAGTTGGA
    CGATATGAACATTTATTTGATTACAATCCATTGTTTGGTGTACCTAACAACAAAGAGATG
    ATAGGAGATGCTGAAAAGGTTATTCACTTAATTGACGCATATGATTTAACAATGAGCGAT
    GCATCAAGTGAGATTAGTCAGACACGTTTAGCATACCTTGTGTTACGCGGTATGGGTATG
    AGTGAAGAAATGATTCAAGAAACACAAAAGAGTGGCGCATTTGAGTTGTTCGACAAAGAT
    ATGGACGTTAAATACTTAACAAAAGATGTAAATGACACAATGATTGAGAACCATTTAGAT
    CGAATCGAAAAGAATATCATGCGTTTTGCAAAGTCAGTAAACTTTAATTCTGACGAGTTT
    AACGGAAATGTACCTATCATTGGAATGAAACTTAAACTTATGGCTTTAGAGAACAAGTGT
    ATGACGTTTGAGCGTAAGATGACAGCTATGTTGAGGTATCAATTCAAAGTTATTTTATCT
    GCATTAAAGCGTAAAGGGTACAACTTGGATGATGATAGTTATTTAAACCTGATATTTAAG
    TTCACTCGTAACATTCCAGTTAATAAGTTAGAAGAATCACAAGTGCTAATTAACCTGAAG
    GGACAAGTTTCAGAACGAACAAGGTTAGGACAATCACAACTAGTTGATGATGTTGATTAC
    GAATTAGACGAAATGGAAAAAGAAAGTCTTGAATTTAATGACAAATTACCTGACATAGAT
    GAAGGTGACGCAAATGACAAATCCCAAAATAACCAATCAGAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1425

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS01660 [old locus tag: NWMN_0290 ]
  • symbol: NWMN_RS01660
  • description: phage portal protein
  • length: 474
  • theoretical pI: 4.43964
  • theoretical MW: 55053.5
  • GRAVY: -0.601477

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage portal protein, SPP1 family (TIGR01538; HMM-score: 193.4)
  • TheSEED:
  • PFAM:
    no clan defined Phage_prot_Gp6; Phage portal protein, SPP1 Gp6-like (PF05133; HMM-score: 276.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001445
    • TAT(Tat/SPI): 0.00018
    • LIPO(Sec/SPII): 0.000325
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDVRIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNTYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSEEMIQETQKSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEGDANDKSQNNQSE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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