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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01730 [old locus tag: NWMN_0304 ]
  • pan locus tag?: SAUPAN000620000
  • symbol: NWMN_RS01730
  • pan gene symbol?:
  • synonym:
  • product: peptidase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS01730 [old locus tag: NWMN_0304 ]
  • symbol: NWMN_RS01730
  • product: peptidase
  • replicon: chromosome
  • strand: +
  • coordinates: 351232..353118
  • length: 1887
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (351232..353118) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
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    361
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    481
    541
    601
    661
    721
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    841
    901
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    1021
    1081
    1141
    1201
    1261
    1321
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    1441
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    1621
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    1861
    ATGCCAATTTTATTAAAAAGTCTACAGGGTGTAGGGCACGCTATTAATGTTAGTACAAAG
    GTAAGTAAAAAGCTAAATGAAGATAGTTCTTTGGATCTAACTATTATCGAGAACGCGAGT
    ACGTTTGACGCAATAGGTGCTATAACTAAAATGTGGACGATCACTCATGTTGAAGGTGAA
    GATGATTTCAACGAATATGTAATTGTCATACTTGATAAGTCTACTATTGGCGAAAAAATA
    AGGCTTGATATCAAAGCTAGGCAAAAAGAACTTGATGACCTTAACAATTCTAGGATTTAC
    CAAGAGTATAACGAAAGTTTTACAGGCGTTGAGTTCTTCAATACTGTCTTTAAAGGAACG
    GGTTATAAGTATGTATTACATCCAAAAGTAGATGCATCTAAATTCGAGGGATTAGGCAAA
    GGAGATACACGATTAGAAATCTTTAAAAAAGGACTTGAGCGTTATCATCTCGAATATGAA
    TACGATGCAAAGACTAAAACGTTTCATTTGTATGATGAATTATCTAAGTTTGCCAATTAT
    TACATTAAAGCTGGTGTGAATGCTGATAACGTCAAAATACAAGAAGATGCATCTAAATGT
    TATACCTTTATTAAAGGTTATGGTGATTTTGATGGACAACAGACTTTTGCAGAAGCGGGA
    CTACAAATTGAATTCACTCATCCATTAGCACAATTGATAGGTAAAAGAGAAGCGCCACCG
    CTTGTTGATGGACGTATTAAAAAAGAAGATAGTTTAAAAAAAGCAATGGAGTTATTGATA
    AAGAAAAGTGTCACTGCTTCTATTTCCTTAGACTTTGTAGCGTTACGTGAACATTTCCCA
    GAAGCTAACCCTAAAATAGGTGATGTTGTTAGAGTGGTGGATTCTGCCATAGGATATAAC
    GACTTAGTGAGAATAGTCGAAATCACTACACATAGAGATGCGTACAATAATATCACTAAG
    CAAGATGTAGTATTAGGAGACTTTACAAGGCGTAATCGTTATAACAAAGCAGTTCATGAT
    GCTGCAAATTATGTTAAAAGCGTAAAATCTACAAAATCCGACCCATCTAAAGAACTAAAA
    GCATTAAACGCAAAAGTTAACGCAAGTTTATCTATAAATAATGAATTGGTTAAGCAGAAT
    GAAAAAATAAACGCTAAAGTCGATAAGATGAATACTAAAACAGTTACAACTGCTAATGGT
    ACGATCATGTACGACTTTACTAGTCAATCAAGTATAAGAAACATCAAATCAATTGGAACG
    ATTGGCGACTCTGTAGCTAGAGGGTCGCACGCAAAAACTAATTTCACAGAAATGTTAGGC
    AAGAAATTGAAAGCTAAAACGACTAATCTTGCAAGAGGTGGCGCAACAATGGCAACAGTT
    CCAATAGGTAAAGAAGCGGTAGAAAACAGCATTTATAGACAAGCAGAGCAAATAAGAGGA
    GACCTAATCATATTACAAGGCACTGATGATGATTGGTTACACGGTTATTGGGCAGGCGTA
    CCGATAGGCACTGATAAAACGGATACAAAAACGTTTTACGGTGCCTTTTGTTCTGCAATT
    GAAGTTATTAGAAAGAATAATCCAGATTCAAAAATACTAGTGATGACAGCTACAAGACAA
    TGCCCTATGAGTGGTACAACAATACGCCGTAAAGACACGGACAAAAACAAACTAGGGTTA
    ACACTTGAGGACTATGTAAACGCTCAAATATTAGCTTGTAGTGAGTTAGATGTACCAGTG
    TTTGACGCATATCACACAGATTACTTTAAGCCATACAATCCAGCTTTTAGGAAAGCGAGC
    ATGGAGGACGGCTTACACCCTAACGAAAAAGGTCACGAGGTTATTATGTACGAGTTAATC
    AAGGATTATTACAGTTTTTACGACTAA
    60
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    1560
    1620
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    1860
    1887

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS01730 [old locus tag: NWMN_0304 ]
  • symbol: NWMN_RS01730
  • description: peptidase
  • length: 628
  • theoretical pI: 7.70694
  • theoretical MW: 70542.5
  • GRAVY: -0.451115

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Phage_barrel (CL0504) Prophage_tail; Prophage endopeptidase tail (PF06605; HMM-score: 91.1)
    SGNH_hydrolase (CL0264) Lipase_GDSL_2; GDSL-like Lipase/Acylhydrolase family (PF13472; HMM-score: 57.8)
    Lipase_GDSL; GDSL-like Lipase/Acylhydrolase (PF00657; HMM-score: 31)
    no clan definedNtox50; Bacterial toxin 50 (PF15542; HMM-score: 13.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.2
    • Ymax_pos: 15
    • Cmax: 0.149
    • Cmax_pos: 60
    • Smax: 0.49
    • Smax_pos: 14
    • Smean: 0.335
    • D: 0.253
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 447044745 NCBI
  • RefSeq: WP_001122001 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MPILLKSLQGVGHAINVSTKVSKKLNEDSSLDLTIIENASTFDAIGAITKMWTITHVEGEDDFNEYVIVILDKSTIGEKIRLDIKARQKELDDLNNSRIYQEYNESFTGVEFFNTVFKGTGYKYVLHPKVDASKFEGLGKGDTRLEIFKKGLERYHLEYEYDAKTKTFHLYDELSKFANYYIKAGVNADNVKIQEDASKCYTFIKGYGDFDGQQTFAEAGLQIEFTHPLAQLIGKREAPPLVDGRIKKEDSLKKAMELLIKKSVTASISLDFVALREHFPEANPKIGDVVRVVDSAIGYNDLVRIVEITTHRDAYNNITKQDVVLGDFTRRNRYNKAVHDAANYVKSVKSTKSDPSKELKALNAKVNASLSINNELVKQNEKINAKVDKMNTKTVTTANGTIMYDFTSQSSIRNIKSIGTIGDSVARGSHAKTNFTEMLGKKLKAKTTNLARGGATMATVPIGKEAVENSIYRQAEQIRGDLIILQGTDDDWLHGYWAGVPIGTDKTDTKTFYGAFCSAIEVIRKNNPDSKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYVNAQILACSELDVPVFDAYHTDYFKPYNPAFRKASMEDGLHPNEKGHEVIMYELIKDYYSFYD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS01730 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]