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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS05830 [old locus tag: NWMN_1030 ]
  • pan locus tag?: SAUPAN001697000
  • symbol: NWMN_RS05830
  • pan gene symbol?:
  • synonym:
  • product: peptidase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS05830 [old locus tag: NWMN_1030 ]
  • symbol: NWMN_RS05830
  • product: peptidase
  • replicon: chromosome
  • strand: +
  • coordinates: 1129264..1131165
  • length: 1902
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_009641 (1129264..1131165) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1030

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
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    1321
    1381
    1441
    1501
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    1621
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    ATGACAATAACTATTAAACCACCTAAAGGTAATGGCGCACCTGTACCAGTAGAAACAACT
    TTAGTAAAAAAAGTTAATGCTGACGGTGTATTAACTTTTGATATTCTAGAAAATAAATAT
    ACTTATGAAGTTATTAACGCTATAGGGAAAAGATGGATTGTTAGTCATGTCGAAGGTGAA
    AACGACAAGAAAGAATATGTAATAACTGTCATTGATAGGAAATCAGAAGGCGACAGACAA
    CTGGTTGAATGTACTGCTAGAGAGATTCCTATAGACAAGTTAATGATTGATAGGATTTAT
    GTTAATGTAACAGGATCTTTTACAGTAGAAAGATATTTTAACATTGTGTTTCAAGGTACT
    GGAATGCTTTTTGAAGTCGAAGGTAAGGTTAAGTCTTCGAAGTTTGAAAATGGTGGTGAA
    GGCGACACAAGGTTAGAAATGTTTAAAAAGGGATTAGAACATTTCGGTTTAGAATATAAA
    ATAACGTATGACAAAAAGAAAGACAGATATAAGTTTGTATTGACGCCTTTTGCAAATCAA
    AAAGCGTCTTATTTTATTTCTGACGAAGTCAACGCCAACGCTATAAAACTCGAGGAAGAT
    GCAAGTGATTTCGCCACCTTCATTAGAGGATATGGTAATTATTCAGGAGAAGAAACATTC
    GAACACGCTGGGCTCGTAATGGAAGCTAGAAGTGCATTAGCTGAAATATACGGCGACATC
    CACGCAGAACCATTTAAAGATGGTAAAGTGACTGACCAAGAAACTATGGATAAAGAATTA
    CAATCGAGATTGAAAAAGTCGTTAAAACAATCTTTGTCTTTGGACTTTTTGGTGTTAAGA
    GAATCATATCCAGAAGCAGACCCACAACCCGGAGACATAGTACAAATAAAATCTACCAAA
    CTAGGTTTGAATGATTTAGTCCGTATAGTACAAGTTAAAACGATTAGGGGTATAAACAAT
    GTAATTGTTAAGCAAGATGTAACGCTTGGTGAGTTTAATCGAGAACAACGATATATGAAA
    AAAGTTAATACTGCAGCTAACTATGTTTCTGGATTAAATGATGTTAACCTTTCTAATCCT
    AGTAAAGCGGCAGAAAACTTGAAGTCTAAAGTAGCGTCAATAGCTAAATCAACACTCGAT
    TTGATGAGTAGAACTGATTTGATTGAAGATAAACAACAGAAGGTAAGCTCTAAAACTGTG
    ACTACATCTGACGGCACTATCGTTCATGATTTTATAGATAAATCAAACATTAAAGATGTA
    AAAACAATTGGAACGATTGGCGATTCTGTAGCTAGAGGATCACATGCGAAAACTAATTTC
    ACAGAAATGTTAGGCAAGAAGTTAAAAGCTAAAACGACCAACCTTGCAAGAGGTGGCGCA
    ACAATGGCAACAGTTCCAATAGGTAAAGAAGCGGTAGAAAACAGCATTTATAGACAAGCA
    GAGCAAATAAGAGGAGACCTAATCATATTACAAGGTACAGATGATGACTGGTTACATGGT
    TATTGGGCAGGCGTACCGATAGGCACTGATAAAACCGACACTAAAACGTTTTACGGCGCC
    TTTTGTTCTGCAATTGAAGTTATCAGGAAAAATAATCCAGCTTCAAAAATACTTGTAATG
    ACAGCTACTAGGCAATGCCCTATGAGTGGTACAACGATACGCCGTAAAGATACGGACAAA
    AACAAACTAGGGTTAACTTTAGAGGATTATGTCAATGCTCAGATATTGGCTTGTAGTGAA
    TTGGATGTACCAGTATATGATGCTTATCACACAGATTATTTCAAACCATATAATCCAGCA
    TTTAGAAAATCTAGCATGCCTGATGGATTACATCCTAATGAAAGAGGTCATGAAGTTATT
    ATGTATGAGCTTATTAAAAATTATTATCAGTTTTATGGATAG
    60
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Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS05830 [old locus tag: NWMN_1030 ]
  • symbol: NWMN_RS05830
  • description: peptidase
  • length: 633
  • theoretical pI: 7.3187
  • theoretical MW: 70987.2
  • GRAVY: -0.452765

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for NCTC8325
  • PFAM:
    Phage_barrel (CL0504) Prophage_tail; Prophage endopeptidase tail (PF06605; HMM-score: 78.7)
    and 2 more
    SGNH_hydrolase (CL0264) Lipase_GDSL_2; GDSL-like Lipase/Acylhydrolase family (PF13472; HMM-score: 54)
    Lipase_GDSL; GDSL-like Lipase/Acylhydrolase (PF00657; HMM-score: 22.6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008885
    • TAT(Tat/SPI): 0.000504
    • LIPO(Sec/SPII): 0.000846
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTITIKPPKGNGAPVPVETTLVKKVNADGVLTFDILENKYTYEVINAIGKRWIVSHVEGENDKKEYVITVIDRKSEGDRQLVECTAREIPIDKLMIDRIYVNVTGSFTVERYFNIVFQGTGMLFEVEGKVKSSKFENGGEGDTRLEMFKKGLEHFGLEYKITYDKKKDRYKFVLTPFANQKASYFISDEVNANAIKLEEDASDFATFIRGYGNYSGEETFEHAGLVMEARSALAEIYGDIHAEPFKDGKVTDQETMDKELQSRLKKSLKQSLSLDFLVLRESYPEADPQPGDIVQIKSTKLGLNDLVRIVQVKTIRGINNVIVKQDVTLGEFNREQRYMKKVNTAANYVSGLNDVNLSNPSKAAENLKSKVASIAKSTLDLMSRTDLIEDKQQKVSSKTVTTSDGTIVHDFIDKSNIKDVKTIGTIGDSVARGSHAKTNFTEMLGKKLKAKTTNLARGGATMATVPIGKEAVENSIYRQAEQIRGDLIILQGTDDDWLHGYWAGVPIGTDKTDTKTFYGAFCSAIEVIRKNNPASKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYVNAQILACSELDVPVYDAYHTDYFKPYNPAFRKSSMPDGLHPNERGHEVIMYELIKNYYQFYG

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]